Atomistry » Gold » PDB 3l47-5ix6 » 4y2i
Atomistry »
  Gold »
    PDB 3l47-5ix6 »
      4y2i »

Gold in PDB 4y2i: Gold Ion Bound to Golb

Protein crystallography data

The structure of Gold Ion Bound to Golb, PDB code: 4y2i was solved by W.Wei, F.Wang, L.Ma, J.Zhao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.56 / 2.00
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 37.093, 37.093, 169.911, 90.00, 90.00, 120.00
R / Rfree (%) 22.7 / 26.6

Gold Binding Sites:

The binding sites of Gold atom in the Gold Ion Bound to Golb (pdb code 4y2i). This binding sites where shown within 5.0 Angstroms radius around Gold atom.
In total 2 binding sites of Gold where determined in the Gold Ion Bound to Golb, PDB code: 4y2i:
Jump to Gold binding site number: 1; 2;

Gold binding site 1 out of 2 in 4y2i

Go back to Gold Binding Sites List in 4y2i
Gold binding site 1 out of 2 in the Gold Ion Bound to Golb


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 1 of Gold Ion Bound to Golb within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Au101

b:27.2
occ:0.17
NZ A:LYS18 1.7 25.5 0.3
CE A:LYS18 2.7 24.2 0.3
N A:VAL30 2.9 24.9 1.0
O A:VAL30 3.3 28.0 1.0
CA A:THR29 3.5 26.0 1.0
C A:THR29 3.7 29.0 1.0
CA A:VAL30 3.8 24.3 1.0
C A:VAL30 4.0 28.0 1.0
CD A:LYS18 4.0 21.9 0.3
CB A:THR29 4.2 28.5 1.0
CB A:VAL30 4.2 23.6 1.0
O A:ALA28 4.3 19.7 1.0
CD2 A:LEU22 4.4 21.0 1.0
O A:HOH201 4.5 40.8 1.0
N A:THR29 4.7 20.3 1.0
CG2 A:VAL30 4.8 26.1 1.0
C A:ALA28 4.8 20.3 1.0
O A:THR29 4.9 31.2 1.0
CD1 A:LEU22 4.9 22.2 1.0
O A:HOH202 5.0 20.6 1.0

Gold binding site 2 out of 2 in 4y2i

Go back to Gold Binding Sites List in 4y2i
Gold binding site 2 out of 2 in the Gold Ion Bound to Golb


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 2 of Gold Ion Bound to Golb within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Au102

b:31.6
occ:0.90
SG A:CYS13 2.5 28.3 1.0
SG A:CYS10 2.6 34.0 1.0
CB A:CYS13 3.0 21.3 1.0
N A:CYS13 3.1 26.3 1.0
N A:CYS10 3.4 34.2 1.0
CB A:CYS10 3.6 29.9 1.0
CA A:CYS13 3.6 23.3 1.0
CA A:CYS10 3.7 33.5 1.0
C A:CYS10 3.8 35.1 1.0
OG1 A:THR9 3.9 32.4 1.0
O A:CYS10 3.9 28.0 1.0
N A:GLY12 4.2 38.5 1.0
C A:GLY12 4.2 36.2 1.0
N A:GLY11 4.3 42.7 1.0
N A:THR9 4.3 28.2 1.0
C A:THR9 4.3 37.0 1.0
CA A:GLY12 4.5 36.3 1.0
CA A:THR9 4.8 33.2 1.0
C A:GLY11 4.9 37.7 1.0
C A:CYS13 4.9 19.7 1.0
CB A:THR9 5.0 31.5 1.0

Reference:

W.Wei, Y.Sun, M.Zhu, X.Liu, P.Sun, F.Wang, Q.Gui, W.Meng, Y.Cao, J.Zhao. Structural Insights and the Surprisingly Low Mechanical Stability of the Au-S Bond in the Gold-Specific Protein Golb J.Am.Chem.Soc. V. 137 15358 2015.
ISSN: ESSN 1520-5126
PubMed: 26636614
DOI: 10.1021/JACS.5B09895
Page generated: Sat Dec 12 01:54:10 2020

Last articles

Zn in 7L0B
Zn in 7KZZ
Zn in 7KZL
Zn in 7L3O
Zn in 7L52
Zn in 7L6T
Zn in 7KZ7
Zn in 7L6R
Zn in 7KKM
Zn in 7KKQ
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy