Gold in PDB 4y2i: Gold Ion Bound to Golb

The structure of Gold Ion Bound to Golb, PDB code: 4y2i was solved by W.Wei, F.Wang, L.Ma, J.Zhao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	31.56 / 2.00
Space group	P 65 2 2
Cell size a, b, c (Å), α, β, γ (°)	37.093, 37.093, 169.911, 90.00, 90.00, 120.00
R / Rfree (%)	22.7 / 26.6

The binding sites of Gold atom in the Gold Ion Bound to Golb (pdb code 4y2i). This binding sites where shown within 5.0 Angstroms radius around Gold atom.
In total 2 binding sites of Gold where determined in the Gold Ion Bound to Golb, PDB code: 4y2i:
Jump to Gold binding site number: 1; 2;

Gold binding site 1 out of 2 in the Gold Ion Bound to Golb


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 1 of Gold Ion Bound to Golb within 5.0Å range: probe atom residue distance (Å) B Occ A:Au101 b:27.2 occ:0.17 NZ A:LYS18 1.7 25.5 0.3 CE A:LYS18 2.7 24.2 0.3 N A:VAL30 2.9 24.9 1.0 O A:VAL30 3.3 28.0 1.0 CA A:THR29 3.5 26.0 1.0 C A:THR29 3.7 29.0 1.0 CA A:VAL30 3.8 24.3 1.0 C A:VAL30 4.0 28.0 1.0 CD A:LYS18 4.0 21.9 0.3 CB A:THR29 4.2 28.5 1.0 CB A:VAL30 4.2 23.6 1.0 O A:ALA28 4.3 19.7 1.0 CD2 A:LEU22 4.4 21.0 1.0 O A:HOH201 4.5 40.8 1.0 N A:THR29 4.7 20.3 1.0 CG2 A:VAL30 4.8 26.1 1.0 C A:ALA28 4.8 20.3 1.0 O A:THR29 4.9 31.2 1.0 CD1 A:LEU22 4.9 22.2 1.0 O A:HOH202 5.0 20.6 1.0

Gold binding site 2 out of 2 in the Gold Ion Bound to Golb


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 2 of Gold Ion Bound to Golb within 5.0Å range: probe atom residue distance (Å) B Occ A:Au102 b:31.6 occ:0.90 SG A:CYS13 2.5 28.3 1.0 SG A:CYS10 2.6 34.0 1.0 CB A:CYS13 3.0 21.3 1.0 N A:CYS13 3.1 26.3 1.0 N A:CYS10 3.4 34.2 1.0 CB A:CYS10 3.6 29.9 1.0 CA A:CYS13 3.6 23.3 1.0 CA A:CYS10 3.7 33.5 1.0 C A:CYS10 3.8 35.1 1.0 OG1 A:THR9 3.9 32.4 1.0 O A:CYS10 3.9 28.0 1.0 N A:GLY12 4.2 38.5 1.0 C A:GLY12 4.2 36.2 1.0 N A:GLY11 4.3 42.7 1.0 N A:THR9 4.3 28.2 1.0 C A:THR9 4.3 37.0 1.0 CA A:GLY12 4.5 36.3 1.0 CA A:THR9 4.8 33.2 1.0 C A:GLY11 4.9 37.7 1.0 C A:CYS13 4.9 19.7 1.0 CB A:THR9 5.0 31.5 1.0

W.Wei, Y.Sun, M.Zhu, X.Liu, P.Sun, F.Wang, Q.Gui, W.Meng, Y.Cao, J.Zhao. Structural Insights and the Surprisingly Low Mechanical Stability of the Au-S Bond in the Gold-Specific Protein Golb J.Am.Chem.Soc. V. 137 15358 2015.
ISSN: ESSN 1520-5126
PubMed: 26636614
DOI: 10.1021/JACS.5B09895