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Gold in PDB 4ovb: Crystal Structure of Oncogenic Suppression Activity Protein - A Plasmid Fertility Inhibition Factor, Gold (I) Cyanide Derivative

Protein crystallography data

The structure of Crystal Structure of Oncogenic Suppression Activity Protein - A Plasmid Fertility Inhibition Factor, Gold (I) Cyanide Derivative, PDB code: 4ovb was solved by P.Maindola, P.Goyal, A.Arulandu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.49 / 2.03
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 60.997, 60.997, 126.948, 90.00, 90.00, 90.00
R / Rfree (%) 19.1 / 23.4

Gold Binding Sites:

The binding sites of Gold atom in the Crystal Structure of Oncogenic Suppression Activity Protein - A Plasmid Fertility Inhibition Factor, Gold (I) Cyanide Derivative (pdb code 4ovb). This binding sites where shown within 5.0 Angstroms radius around Gold atom.
In total 9 binding sites of Gold where determined in the Crystal Structure of Oncogenic Suppression Activity Protein - A Plasmid Fertility Inhibition Factor, Gold (I) Cyanide Derivative, PDB code: 4ovb:
Jump to Gold binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Gold binding site 1 out of 9 in 4ovb

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Gold binding site 1 out of 9 in the Crystal Structure of Oncogenic Suppression Activity Protein - A Plasmid Fertility Inhibition Factor, Gold (I) Cyanide Derivative


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 1 of Crystal Structure of Oncogenic Suppression Activity Protein - A Plasmid Fertility Inhibition Factor, Gold (I) Cyanide Derivative within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Au203

b:39.5
occ:0.84
AU A:AUC203 0.0 39.5 0.8
C1 A:AUC203 2.1 30.5 0.8
C2 A:AUC203 2.2 39.1 0.8
N1 A:AUC203 3.3 34.0 0.8
N2 A:AUC203 3.3 40.5 0.8
CG A:HIS107 3.6 38.6 1.0
NH1 A:ARG140 3.7 30.4 1.0
CD2 A:HIS107 3.7 38.9 1.0
CB A:HIS107 3.8 36.4 1.0
CG1 A:VAL116 3.8 31.4 1.0
CZ A:ARG140 3.8 32.3 1.0
NH2 A:ARG140 3.8 33.6 1.0
ND1 A:HIS107 4.0 43.1 1.0
NE2 A:HIS107 4.2 42.1 1.0
O A:HOH397 4.4 37.0 1.0
CD A:PRO117 4.4 30.5 1.0
CE1 A:HIS107 4.4 39.5 1.0
CG2 A:VAL116 4.5 31.2 1.0
NE A:ARG140 4.6 30.5 1.0
CB A:VAL116 4.6 31.1 1.0
O A:HOH358 4.8 40.1 1.0
CA A:VAL116 4.9 31.0 1.0

Gold binding site 2 out of 9 in 4ovb

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Gold binding site 2 out of 9 in the Crystal Structure of Oncogenic Suppression Activity Protein - A Plasmid Fertility Inhibition Factor, Gold (I) Cyanide Derivative


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 2 of Crystal Structure of Oncogenic Suppression Activity Protein - A Plasmid Fertility Inhibition Factor, Gold (I) Cyanide Derivative within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Au204

b:72.6
occ:0.44
AU A:AUC204 0.0 72.6 0.4
C2 A:AUC204 2.1 47.6 0.4
C1 A:AUC204 2.1 42.0 0.4
AU A:AUC205 3.0 62.2 0.5
C2 A:AUC205 3.1 45.4 0.5
N2 A:AUC205 3.7 45.7 0.5
CD1 A:ILE175 4.4 34.2 1.0

Gold binding site 3 out of 9 in 4ovb

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Gold binding site 3 out of 9 in the Crystal Structure of Oncogenic Suppression Activity Protein - A Plasmid Fertility Inhibition Factor, Gold (I) Cyanide Derivative


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 3 of Crystal Structure of Oncogenic Suppression Activity Protein - A Plasmid Fertility Inhibition Factor, Gold (I) Cyanide Derivative within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Au205

b:62.2
occ:0.45
AU A:AUC205 0.0 62.2 0.5
C2 A:AUC205 2.1 45.4 0.5
AU A:AUC204 3.0 72.6 0.4
CD1 A:ILE175 3.2 34.2 1.0
CG A:GLN183 3.3 38.1 1.0
N2 A:AUC205 3.3 45.7 0.5
C2 A:AUC204 3.4 47.6 0.4
CB A:GLN183 3.5 42.0 1.0
CD1 A:LEU180 3.8 37.9 1.0
C1 A:AUC204 4.0 42.0 0.4
CA A:LEU180 4.6 34.9 1.0
CG1 A:ILE175 4.6 31.4 1.0
O A:LYS179 4.6 34.8 1.0

Gold binding site 4 out of 9 in 4ovb

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Gold binding site 4 out of 9 in the Crystal Structure of Oncogenic Suppression Activity Protein - A Plasmid Fertility Inhibition Factor, Gold (I) Cyanide Derivative


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 4 of Crystal Structure of Oncogenic Suppression Activity Protein - A Plasmid Fertility Inhibition Factor, Gold (I) Cyanide Derivative within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Au206

b:39.0
occ:0.24
AU A:AUC206 0.0 39.0 0.2
C2 A:AUC206 2.1 27.8 0.2
N2 A:AUC206 3.3 29.4 0.2
CE2 A:TYR68 3.3 28.8 1.0
CD2 A:TYR68 3.4 27.7 1.0
CZ A:TYR68 3.5 29.7 1.0
CG A:TYR68 3.6 27.4 1.0
CE1 A:TYR68 3.7 27.1 1.0
CD1 A:TYR68 3.7 27.9 1.0
CD A:PRO31 4.1 28.8 1.0
OH A:TYR68 4.2 29.9 1.0
O A:PRO31 4.2 28.3 1.0
CB A:LEU30 4.3 31.6 1.0
CB A:TYR68 4.4 26.2 1.0
CD1 A:LEU30 4.4 35.8 1.0
O A:HOH389 4.5 44.5 1.0
CG A:PRO31 4.6 27.2 1.0
CD2 A:LEU30 4.7 29.6 1.0
O A:HOH336 4.7 38.0 1.0
CG A:LEU30 4.7 33.5 1.0
N A:PRO31 4.8 27.8 1.0
CB A:PRO31 5.0 29.3 1.0

Gold binding site 5 out of 9 in 4ovb

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Gold binding site 5 out of 9 in the Crystal Structure of Oncogenic Suppression Activity Protein - A Plasmid Fertility Inhibition Factor, Gold (I) Cyanide Derivative


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 5 of Crystal Structure of Oncogenic Suppression Activity Protein - A Plasmid Fertility Inhibition Factor, Gold (I) Cyanide Derivative within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Au207

b:57.7
occ:0.29
O A:TRP38 2.9 62.0 1.0
C A:TRP38 3.8 59.2 1.0
CB A:ASN39 4.3 60.7 1.0
N A:ASN39 4.5 56.0 1.0
CA A:ASN39 4.5 59.5 1.0
CA A:TRP38 4.7 59.8 1.0
N A:TRP38 4.9 62.4 1.0

Gold binding site 6 out of 9 in 4ovb

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Gold binding site 6 out of 9 in the Crystal Structure of Oncogenic Suppression Activity Protein - A Plasmid Fertility Inhibition Factor, Gold (I) Cyanide Derivative


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 6 of Crystal Structure of Oncogenic Suppression Activity Protein - A Plasmid Fertility Inhibition Factor, Gold (I) Cyanide Derivative within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Au208

b:44.7
occ:0.34
O A:THR135 2.7 28.2 1.0
O A:HOH312 3.2 44.5 1.0
C A:THR135 3.3 30.5 1.0
O A:HOH322 3.3 36.5 1.0
NE2 A:GLN87 3.5 28.0 1.0
O A:PHE134 3.8 27.1 1.0
N A:ASP136 3.9 28.7 1.0
CA A:ASP136 3.9 29.8 1.0
CA A:THR135 4.1 29.6 1.0
C A:PHE134 4.1 25.7 1.0
CE A:MET138 4.3 32.7 1.0
CB A:PHE134 4.3 25.7 1.0
N A:THR135 4.4 26.1 1.0
CD A:GLN87 4.6 29.5 1.0
CB A:ASP136 4.8 29.3 1.0
C A:ASP136 4.9 30.0 1.0
CA A:PHE134 4.9 25.9 1.0

Gold binding site 7 out of 9 in 4ovb

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Gold binding site 7 out of 9 in the Crystal Structure of Oncogenic Suppression Activity Protein - A Plasmid Fertility Inhibition Factor, Gold (I) Cyanide Derivative


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 7 of Crystal Structure of Oncogenic Suppression Activity Protein - A Plasmid Fertility Inhibition Factor, Gold (I) Cyanide Derivative within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Au209

b:72.0
occ:0.54
O A:GLU40 3.0 44.0 1.0
C A:GLU40 3.4 44.3 1.0
N A:GLU40 3.7 53.3 1.0
ND2 A:ASN36 3.9 48.9 1.0
CA A:GLU40 3.9 47.3 1.0
C A:ASN39 3.9 58.4 1.0
CB A:CYS184 4.0 36.4 1.0
N A:VAL41 4.1 39.0 1.0
O A:HOH319 4.1 38.0 1.0
O A:ASN39 4.4 57.0 1.0
CA A:ASN39 4.5 59.5 1.0
CG A:ARG185 4.5 43.3 1.0
CA A:VAL41 4.6 35.7 1.0
OD1 A:ASN36 4.6 54.7 1.0
CG A:ASN36 4.7 52.0 1.0
N A:ARG185 4.9 43.8 1.0
O A:ARG181 4.9 43.2 1.0
CG2 A:VAL41 4.9 34.4 1.0
C A:CYS184 5.0 47.6 1.0

Gold binding site 8 out of 9 in 4ovb

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Gold binding site 8 out of 9 in the Crystal Structure of Oncogenic Suppression Activity Protein - A Plasmid Fertility Inhibition Factor, Gold (I) Cyanide Derivative


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 8 of Crystal Structure of Oncogenic Suppression Activity Protein - A Plasmid Fertility Inhibition Factor, Gold (I) Cyanide Derivative within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Au210

b:49.7
occ:0.38
AU A:AUC211 2.9 54.9 0.2
O A:ASN36 3.9 57.3 1.0
CB A:PRO35 4.0 44.5 1.0
N A:ASN36 4.0 48.2 1.0
CA A:PRO35 4.4 39.7 1.0
C A:PRO35 4.4 44.3 1.0
C A:ASN36 4.5 58.6 1.0
CA A:ASN36 4.8 53.5 1.0
O A:LEU188 4.8 49.2 1.0

Gold binding site 9 out of 9 in 4ovb

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Gold binding site 9 out of 9 in the Crystal Structure of Oncogenic Suppression Activity Protein - A Plasmid Fertility Inhibition Factor, Gold (I) Cyanide Derivative


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 9 of Crystal Structure of Oncogenic Suppression Activity Protein - A Plasmid Fertility Inhibition Factor, Gold (I) Cyanide Derivative within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Au211

b:54.9
occ:0.19
O A:LEU188 2.8 49.2 1.0
AU A:AUC210 2.9 49.7 0.4
OXT A:LEU188 3.0 58.5 1.0
C A:LEU188 3.2 50.9 1.0
O A:HOH347 3.9 49.5 1.0
CA A:LEU188 4.5 49.6 1.0
O A:HOH357 4.7 44.9 1.0
CB A:LEU188 4.9 49.8 1.0
CB A:PRO35 4.9 44.5 1.0

Reference:

P.Maindola, P.Goyal, A.Arulandu. Multiple Enzymatic Activities of Parb/Srx Superfamily Mediate Sexual Conflict Among Conjugative Plasmids To Be Published.
Page generated: Sat Dec 12 01:54:08 2020

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