Atomistry » Gold » PDB 3l47-5ix6 » 4acl
Atomistry »
  Gold »
    PDB 3l47-5ix6 »
      4acl »

Gold in PDB 4acl: 3D Structure of Dotu From Francisella Novicida

Protein crystallography data

The structure of 3D Structure of Dotu From Francisella Novicida, PDB code: 4acl was solved by C.S.Robb, F.E.Nano, A.B.Boraston, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 65.43 / 2.49
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 39.309, 85.314, 66.989, 90.00, 102.38, 90.00
R / Rfree (%) 21.8 / 27.9

Other elements in 4acl:

The structure of 3D Structure of Dotu From Francisella Novicida also contains other interesting chemical elements:

Sodium (Na) 1 atom

Gold Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Gold atom in the 3D Structure of Dotu From Francisella Novicida (pdb code 4acl). This binding sites where shown within 5.0 Angstroms radius around Gold atom.
In total 12 binding sites of Gold where determined in the 3D Structure of Dotu From Francisella Novicida, PDB code: 4acl:
Jump to Gold binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Gold binding site 1 out of 12 in 4acl

Go back to Gold Binding Sites List in 4acl
Gold binding site 1 out of 12 in the 3D Structure of Dotu From Francisella Novicida


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 1 of 3D Structure of Dotu From Francisella Novicida within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Au1159

b:59.8
occ:1.00
CB A:CYS57 3.2 28.2 1.0
CG A:LEU49 3.4 42.2 1.0
CD2 A:LEU49 3.5 36.1 1.0
CD1 A:LEU49 3.6 44.5 1.0
NE2 A:GLN45 3.7 37.4 1.0
CD A:GLN45 3.9 36.5 1.0
CB A:GLN45 3.9 38.8 1.0
CG A:GLN45 4.0 39.3 1.0
OE1 A:GLN45 4.5 34.8 1.0
CA A:GLN45 4.6 39.6 1.0
CA A:CYS57 4.7 29.6 1.0
OE1 A:GLU54 4.7 49.4 1.0
O A:GLN45 4.7 42.2 1.0
CB A:LEU49 4.8 40.8 1.0
C A:GLN45 5.0 41.2 1.0

Gold binding site 2 out of 12 in 4acl

Go back to Gold Binding Sites List in 4acl
Gold binding site 2 out of 12 in the 3D Structure of Dotu From Francisella Novicida


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 2 of 3D Structure of Dotu From Francisella Novicida within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Au1160

b:58.2
occ:0.50
ND1 A:HIS154 2.6 59.3 1.0
O A:HOH2022 3.1 38.2 1.0
CE2 A:TYR120 3.4 35.8 1.0
CG A:HIS154 3.5 59.5 1.0
CE1 A:HIS154 3.5 56.9 1.0
CD2 A:TYR120 3.7 35.3 1.0
CB A:HIS154 3.7 61.0 1.0
CZ A:TYR120 3.7 37.1 1.0
CG2 A:ILE114 4.0 51.4 1.0
O A:HIS154 4.1 64.1 1.0
OH A:TYR120 4.2 36.2 1.0
CG A:TYR120 4.3 35.4 1.0
CE1 A:TYR120 4.3 34.8 1.0
CA A:HIS154 4.4 61.7 1.0
OE1 A:GLN117 4.4 59.4 1.0
CD1 A:TYR120 4.5 33.8 1.0
NE2 A:HIS154 4.6 57.3 1.0
CD2 A:HIS154 4.6 59.5 1.0
O A:TYR115 4.7 42.5 1.0
C A:HIS154 4.7 63.0 1.0
CD1 A:ILE114 4.8 54.4 1.0

Gold binding site 3 out of 12 in 4acl

Go back to Gold Binding Sites List in 4acl
Gold binding site 3 out of 12 in the 3D Structure of Dotu From Francisella Novicida


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 3 of 3D Structure of Dotu From Francisella Novicida within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Au1161

b:97.1
occ:0.40
NE2 A:HIS154 2.9 57.3 1.0
CE1 A:HIS154 3.1 56.9 1.0
O A:LEU110 3.2 49.4 1.0
C A:LEU110 4.2 49.0 1.0
CD2 A:HIS154 4.3 59.5 1.0
ND1 A:HIS154 4.4 59.3 1.0
CA A:LEU110 4.4 47.4 1.0
CD1 A:ILE114 4.4 54.4 1.0
CB A:LEU110 4.9 46.5 1.0
OE1 A:GLU150 4.9 59.4 1.0
CD2 A:LEU110 5.0 42.9 1.0
CG A:HIS154 5.0 59.5 1.0

Gold binding site 4 out of 12 in 4acl

Go back to Gold Binding Sites List in 4acl
Gold binding site 4 out of 12 in the 3D Structure of Dotu From Francisella Novicida


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 4 of 3D Structure of Dotu From Francisella Novicida within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Au1162

b:72.4
occ:0.20
CB A:HIS128 3.2 36.0 1.0
O A:HOH2028 3.3 42.6 1.0
CA A:HIS128 3.5 36.5 1.0
O A:HIS128 3.6 37.9 1.0
AU A:AU1166 4.0 59.2 0.3
C A:HIS128 4.1 37.0 1.0
N A:HIS128 4.8 36.7 1.0

Gold binding site 5 out of 12 in 4acl

Go back to Gold Binding Sites List in 4acl
Gold binding site 5 out of 12 in the 3D Structure of Dotu From Francisella Novicida


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 5 of 3D Structure of Dotu From Francisella Novicida within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Au1164

b:57.1
occ:0.50
ND1 A:HIS142 4.0 41.4 0.5
CE1 A:HIS142 4.5 42.0 0.5

Gold binding site 6 out of 12 in 4acl

Go back to Gold Binding Sites List in 4acl
Gold binding site 6 out of 12 in the 3D Structure of Dotu From Francisella Novicida


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 6 of 3D Structure of Dotu From Francisella Novicida within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Au1166

b:59.2
occ:0.30
OD2 A:ASP152 3.0 55.7 1.0
AU A:AU1162 4.0 72.4 0.2
CG A:ASP152 4.2 54.9 1.0
O A:HOH2027 4.6 46.8 1.0
OD1 A:ASP152 4.7 53.0 1.0
O A:HOH2028 5.0 42.6 1.0

Gold binding site 7 out of 12 in 4acl

Go back to Gold Binding Sites List in 4acl
Gold binding site 7 out of 12 in the 3D Structure of Dotu From Francisella Novicida


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 7 of 3D Structure of Dotu From Francisella Novicida within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Au1157

b:83.7
occ:0.70
ND1 B:HIS154 2.8 68.8 1.0
CE2 B:TYR120 3.5 40.8 1.0
CG B:HIS154 3.5 68.5 1.0
CB B:HIS154 3.6 68.4 1.0
O B:HOH2009 3.7 60.9 1.0
CD2 B:TYR120 3.7 40.7 1.0
CE1 B:HIS154 3.8 67.8 1.0
O B:HIS154 3.9 69.8 1.0
CZ B:TYR120 3.9 45.0 1.0
OE1 B:GLN117 4.1 52.7 1.0
CA B:HIS154 4.2 68.7 1.0
CG B:TYR120 4.3 41.2 1.0
OH B:TYR120 4.4 44.9 1.0
CE1 B:TYR120 4.4 46.7 1.0
C B:HIS154 4.5 69.8 1.0
CD1 B:TYR120 4.6 44.4 1.0
CD2 B:HIS154 4.7 69.0 1.0
O B:TYR115 4.7 46.9 1.0
NE2 B:HIS154 4.8 68.7 1.0

Gold binding site 8 out of 12 in 4acl

Go back to Gold Binding Sites List in 4acl
Gold binding site 8 out of 12 in the 3D Structure of Dotu From Francisella Novicida


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 8 of 3D Structure of Dotu From Francisella Novicida within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Au1158

b:55.8
occ:0.30
OD2 B:ASP152 2.7 66.4 1.0
CG B:ASP152 3.6 64.4 1.0
OD1 B:ASP152 4.0 62.9 1.0
OG B:SER124 4.6 39.7 1.0
CB B:ASP152 4.8 63.3 1.0

Gold binding site 9 out of 12 in 4acl

Go back to Gold Binding Sites List in 4acl
Gold binding site 9 out of 12 in the 3D Structure of Dotu From Francisella Novicida


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 9 of 3D Structure of Dotu From Francisella Novicida within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Au1159

b:66.6
occ:0.30
ND1 B:HIS142 2.2 39.3 1.0
CG B:HIS142 3.0 37.8 1.0
CB B:HIS142 3.2 36.1 1.0
CE1 B:HIS142 3.3 36.1 1.0
CD2 B:HIS142 4.2 35.8 1.0
NE2 B:HIS142 4.3 35.5 1.0
CA B:HIS142 4.7 36.2 1.0

Gold binding site 10 out of 12 in 4acl

Go back to Gold Binding Sites List in 4acl
Gold binding site 10 out of 12 in the 3D Structure of Dotu From Francisella Novicida


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 10 of 3D Structure of Dotu From Francisella Novicida within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Au1160

b:78.9
occ:1.00
CB B:CYS57 2.8 36.7 1.0
O B:HOH2004 3.2 56.7 1.0
CD1 B:LEU49 3.3 45.8 1.0
NE2 B:GLN45 3.4 51.9 1.0
CG B:GLN45 3.7 50.8 1.0
CD2 B:LEU49 3.8 42.1 1.0
CG B:LEU49 3.9 45.1 1.0
CD B:GLN45 3.9 51.1 1.0
OH B:TYR93 4.0 64.2 1.0
CA B:CYS57 4.2 36.7 1.0
CB B:GLN45 4.3 50.8 1.0
OE1 B:GLU54 4.3 43.2 0.1
C B:CYS57 4.6 36.2 1.0
O B:GLU54 4.7 40.9 1.0
N B:LYS58 4.8 35.6 1.0
CD B:GLU54 4.9 44.0 1.0
CA B:GLN45 4.9 51.1 1.0

Reference:

C.S.Robb, F.E.Nano, A.B.Boraston. The Structure of the Conserved Type Six Secretion Protein Tssl (Dotu) From Francisella Novicida J.Mol.Biol. V. 419 277 2012.
ISSN: ISSN 0022-2836
PubMed: 22504227
DOI: 10.1016/J.JMB.2012.04.003
Page generated: Sat Dec 12 01:53:59 2020

Last articles

Tb in 6TVY
Si in 6Y7O
Rh in 6WRM
Rh in 6WRL
Ni in 6Y8Z
Ni in 6Y8Y
Na in 6ZXZ
Na in 7ACG
Na in 6YLS
Na in 6Y8Z
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy