Gold in PDB 4acl: 3D Structure of Dotu From Francisella Novicida

The structure of 3D Structure of Dotu From Francisella Novicida, PDB code: 4acl was solved by C.S.Robb, F.E.Nano, A.B.Boraston, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	65.43 / 2.49
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	39.309, 85.314, 66.989, 90.00, 102.38, 90.00
R / Rfree (%)	21.8 / 27.9

The structure of 3D Structure of Dotu From Francisella Novicida also contains other interesting chemical elements:

Sodium

(Na)

1 atom

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Gold atom in the 3D Structure of Dotu From Francisella Novicida (pdb code 4acl). This binding sites where shown within 5.0 Angstroms radius around Gold atom.
In total 12 binding sites of Gold where determined in the 3D Structure of Dotu From Francisella Novicida, PDB code: 4acl:
Jump to Gold binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Gold binding site 1 out of 12 in the 3D Structure of Dotu From Francisella Novicida


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 1 of 3D Structure of Dotu From Francisella Novicida within 5.0Å range: probe atom residue distance (Å) B Occ A:Au1159 b:59.8 occ:1.00 CB A:CYS57 3.2 28.2 1.0 CG A:LEU49 3.4 42.2 1.0 CD2 A:LEU49 3.5 36.1 1.0 CD1 A:LEU49 3.6 44.5 1.0 NE2 A:GLN45 3.7 37.4 1.0 CD A:GLN45 3.9 36.5 1.0 CB A:GLN45 3.9 38.8 1.0 CG A:GLN45 4.0 39.3 1.0 OE1 A:GLN45 4.5 34.8 1.0 CA A:GLN45 4.6 39.6 1.0 CA A:CYS57 4.7 29.6 1.0 OE1 A:GLU54 4.7 49.4 1.0 O A:GLN45 4.7 42.2 1.0 CB A:LEU49 4.8 40.8 1.0 C A:GLN45 5.0 41.2 1.0

Gold binding site 2 out of 12 in the 3D Structure of Dotu From Francisella Novicida


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 2 of 3D Structure of Dotu From Francisella Novicida within 5.0Å range: probe atom residue distance (Å) B Occ A:Au1160 b:58.2 occ:0.50 ND1 A:HIS154 2.6 59.3 1.0 O A:HOH2022 3.1 38.2 1.0 CE2 A:TYR120 3.4 35.8 1.0 CG A:HIS154 3.5 59.5 1.0 CE1 A:HIS154 3.5 56.9 1.0 CD2 A:TYR120 3.7 35.3 1.0 CB A:HIS154 3.7 61.0 1.0 CZ A:TYR120 3.7 37.1 1.0 CG2 A:ILE114 4.0 51.4 1.0 O A:HIS154 4.1 64.1 1.0 OH A:TYR120 4.2 36.2 1.0 CG A:TYR120 4.3 35.4 1.0 CE1 A:TYR120 4.3 34.8 1.0 CA A:HIS154 4.4 61.7 1.0 OE1 A:GLN117 4.4 59.4 1.0 CD1 A:TYR120 4.5 33.8 1.0 NE2 A:HIS154 4.6 57.3 1.0 CD2 A:HIS154 4.6 59.5 1.0 O A:TYR115 4.7 42.5 1.0 C A:HIS154 4.7 63.0 1.0 CD1 A:ILE114 4.8 54.4 1.0

Gold binding site 3 out of 12 in the 3D Structure of Dotu From Francisella Novicida


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 3 of 3D Structure of Dotu From Francisella Novicida within 5.0Å range: probe atom residue distance (Å) B Occ A:Au1161 b:97.1 occ:0.40 NE2 A:HIS154 2.9 57.3 1.0 CE1 A:HIS154 3.1 56.9 1.0 O A:LEU110 3.2 49.4 1.0 C A:LEU110 4.2 49.0 1.0 CD2 A:HIS154 4.3 59.5 1.0 ND1 A:HIS154 4.4 59.3 1.0 CA A:LEU110 4.4 47.4 1.0 CD1 A:ILE114 4.4 54.4 1.0 CB A:LEU110 4.9 46.5 1.0 OE1 A:GLU150 4.9 59.4 1.0 CD2 A:LEU110 5.0 42.9 1.0 CG A:HIS154 5.0 59.5 1.0

Gold binding site 4 out of 12 in the 3D Structure of Dotu From Francisella Novicida


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 4 of 3D Structure of Dotu From Francisella Novicida within 5.0Å range: probe atom residue distance (Å) B Occ A:Au1162 b:72.4 occ:0.20 CB A:HIS128 3.2 36.0 1.0 O A:HOH2028 3.3 42.6 1.0 CA A:HIS128 3.5 36.5 1.0 O A:HIS128 3.6 37.9 1.0 AU A:AU1166 4.0 59.2 0.3 C A:HIS128 4.1 37.0 1.0 N A:HIS128 4.8 36.7 1.0

Gold binding site 5 out of 12 in the 3D Structure of Dotu From Francisella Novicida


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 5 of 3D Structure of Dotu From Francisella Novicida within 5.0Å range: probe atom residue distance (Å) B Occ A:Au1164 b:57.1 occ:0.50 ND1 A:HIS142 4.0 41.4 0.5 CE1 A:HIS142 4.5 42.0 0.5

Gold binding site 6 out of 12 in the 3D Structure of Dotu From Francisella Novicida


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 6 of 3D Structure of Dotu From Francisella Novicida within 5.0Å range: probe atom residue distance (Å) B Occ A:Au1166 b:59.2 occ:0.30 OD2 A:ASP152 3.0 55.7 1.0 AU A:AU1162 4.0 72.4 0.2 CG A:ASP152 4.2 54.9 1.0 O A:HOH2027 4.6 46.8 1.0 OD1 A:ASP152 4.7 53.0 1.0 O A:HOH2028 5.0 42.6 1.0

Gold binding site 7 out of 12 in the 3D Structure of Dotu From Francisella Novicida


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 7 of 3D Structure of Dotu From Francisella Novicida within 5.0Å range: probe atom residue distance (Å) B Occ B:Au1157 b:83.7 occ:0.70 ND1 B:HIS154 2.8 68.8 1.0 CE2 B:TYR120 3.5 40.8 1.0 CG B:HIS154 3.5 68.5 1.0 CB B:HIS154 3.6 68.4 1.0 O B:HOH2009 3.7 60.9 1.0 CD2 B:TYR120 3.7 40.7 1.0 CE1 B:HIS154 3.8 67.8 1.0 O B:HIS154 3.9 69.8 1.0 CZ B:TYR120 3.9 45.0 1.0 OE1 B:GLN117 4.1 52.7 1.0 CA B:HIS154 4.2 68.7 1.0 CG B:TYR120 4.3 41.2 1.0 OH B:TYR120 4.4 44.9 1.0 CE1 B:TYR120 4.4 46.7 1.0 C B:HIS154 4.5 69.8 1.0 CD1 B:TYR120 4.6 44.4 1.0 CD2 B:HIS154 4.7 69.0 1.0 O B:TYR115 4.7 46.9 1.0 NE2 B:HIS154 4.8 68.7 1.0

Gold binding site 8 out of 12 in the 3D Structure of Dotu From Francisella Novicida


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 8 of 3D Structure of Dotu From Francisella Novicida within 5.0Å range: probe atom residue distance (Å) B Occ B:Au1158 b:55.8 occ:0.30 OD2 B:ASP152 2.7 66.4 1.0 CG B:ASP152 3.6 64.4 1.0 OD1 B:ASP152 4.0 62.9 1.0 OG B:SER124 4.6 39.7 1.0 CB B:ASP152 4.8 63.3 1.0

Gold binding site 9 out of 12 in the 3D Structure of Dotu From Francisella Novicida


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 9 of 3D Structure of Dotu From Francisella Novicida within 5.0Å range: probe atom residue distance (Å) B Occ B:Au1159 b:66.6 occ:0.30 ND1 B:HIS142 2.2 39.3 1.0 CG B:HIS142 3.0 37.8 1.0 CB B:HIS142 3.2 36.1 1.0 CE1 B:HIS142 3.3 36.1 1.0 CD2 B:HIS142 4.2 35.8 1.0 NE2 B:HIS142 4.3 35.5 1.0 CA B:HIS142 4.7 36.2 1.0

Gold binding site 10 out of 12 in the 3D Structure of Dotu From Francisella Novicida


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 10 of 3D Structure of Dotu From Francisella Novicida within 5.0Å range: probe atom residue distance (Å) B Occ B:Au1160 b:78.9 occ:1.00 CB B:CYS57 2.8 36.7 1.0 O B:HOH2004 3.2 56.7 1.0 CD1 B:LEU49 3.3 45.8 1.0 NE2 B:GLN45 3.4 51.9 1.0 CG B:GLN45 3.7 50.8 1.0 CD2 B:LEU49 3.8 42.1 1.0 CG B:LEU49 3.9 45.1 1.0 CD B:GLN45 3.9 51.1 1.0 OH B:TYR93 4.0 64.2 1.0 CA B:CYS57 4.2 36.7 1.0 CB B:GLN45 4.3 50.8 1.0 OE1 B:GLU54 4.3 43.2 0.1 C B:CYS57 4.6 36.2 1.0 O B:GLU54 4.7 40.9 1.0 N B:LYS58 4.8 35.6 1.0 CD B:GLU54 4.9 44.0 1.0 CA B:GLN45 4.9 51.1 1.0

C.S.Robb, F.E.Nano, A.B.Boraston. The Structure of the Conserved Type Six Secretion Protein Tssl (Dotu) From Francisella Novicida J.Mol.Biol. V. 419 277 2012.
ISSN: ISSN 0022-2836
PubMed: 22504227
DOI: 10.1016/J.JMB.2012.04.003