Atomistry » Gold » PDB 3l47-5ix6 » 4ac6
Atomistry »
  Gold »
    PDB 3l47-5ix6 »
      4ac6 »

Gold in PDB 4ac6: Corynebacterium Glutamicum Acnr Au Derivative Structure

Protein crystallography data

The structure of Corynebacterium Glutamicum Acnr Au Derivative Structure, PDB code: 4ac6 was solved by J.Garcia-Nafria, M.Baumgart, J.P.Turkenburg, A.J.Wilkinson, M.Bott, K.S.Wilson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 73.25 / 2.54
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 34.142, 72.886, 73.250, 90.00, 90.00, 90.00
R / Rfree (%) 19.454 / 26.336

Gold Binding Sites:

The binding sites of Gold atom in the Corynebacterium Glutamicum Acnr Au Derivative Structure (pdb code 4ac6). This binding sites where shown within 5.0 Angstroms radius around Gold atom.
In total 4 binding sites of Gold where determined in the Corynebacterium Glutamicum Acnr Au Derivative Structure, PDB code: 4ac6:
Jump to Gold binding site number: 1; 2; 3; 4;

Gold binding site 1 out of 4 in 4ac6

Go back to Gold Binding Sites List in 4ac6
Gold binding site 1 out of 4 in the Corynebacterium Glutamicum Acnr Au Derivative Structure


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 1 of Corynebacterium Glutamicum Acnr Au Derivative Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Au1187

b:41.3
occ:0.80
CG2 A:VAL73 3.6 9.1 1.0
O A:VAL82 3.7 12.6 1.0
CG1 A:VAL73 3.8 9.3 1.0
CA A:VAL82 3.8 12.7 1.0
CA A:GLY85 3.8 17.2 1.0
O A:GLU81 3.9 12.3 1.0
CB A:VAL73 4.1 9.6 1.0
C A:VAL82 4.2 13.1 1.0
N A:GLY85 4.4 17.6 1.0
O A:HOH2026 4.4 35.2 1.0
C A:GLY85 4.5 17.6 1.0
C A:GLU81 4.6 11.9 1.0
N A:VAL82 4.6 12.3 1.0
CB A:VAL82 4.7 12.5 1.0
CG1 A:VAL82 4.7 12.2 1.0
N A:MET86 4.8 18.1 1.0
CG2 A:VAL82 4.9 12.1 1.0

Gold binding site 2 out of 4 in 4ac6

Go back to Gold Binding Sites List in 4ac6
Gold binding site 2 out of 4 in the Corynebacterium Glutamicum Acnr Au Derivative Structure


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 2 of Corynebacterium Glutamicum Acnr Au Derivative Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Au1188

b:37.7
occ:1.00
OD2 A:ASP66 3.7 14.2 1.0
CG A:MET96 3.8 18.5 1.0
CD A:ARG99 3.8 18.6 1.0
NH1 A:ARG99 3.9 15.9 1.0
CG A:ASP66 4.1 14.8 1.0
NE A:ARG99 4.2 17.6 1.0
O A:HOH2020 4.2 38.5 1.0
CZ A:ARG99 4.2 16.9 1.0
NE1 A:TRP95 4.3 13.1 1.0
CB A:ASP66 4.3 14.6 1.0
CE A:MET86 4.3 23.9 1.0
CD1 A:TRP95 4.4 13.1 1.0
SD A:MET70 4.5 12.4 1.0
SD A:MET96 4.5 19.6 1.0
NH2 A:ARG69 4.7 17.8 1.0
OD1 A:ASP66 4.8 15.1 1.0
CD1 A:ILE161 4.8 13.9 1.0

Gold binding site 3 out of 4 in 4ac6

Go back to Gold Binding Sites List in 4ac6
Gold binding site 3 out of 4 in the Corynebacterium Glutamicum Acnr Au Derivative Structure


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 3 of Corynebacterium Glutamicum Acnr Au Derivative Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Au1189

b:23.4
occ:0.50
ND1 A:HIS27 1.9 26.8 1.0
SG A:CYS23 2.5 10.7 1.0
CE1 A:HIS27 2.8 27.8 1.0
O A:CYS23 2.9 15.5 1.0
CB A:CYS23 3.0 13.8 1.0
CG A:HIS27 3.0 26.0 1.0
CA A:CYS23 3.0 15.1 1.0
C A:CYS23 3.3 15.4 1.0
CB A:HIS27 3.5 25.4 1.0
NE2 A:HIS27 3.9 28.8 1.0
CB A:ARG36 4.0 22.8 1.0
CG A:GLU26 4.0 31.7 1.0
CD2 A:HIS27 4.1 26.4 1.0
CA A:ALA32 4.3 25.5 1.0
CD A:ARG36 4.3 24.0 1.0
N A:HIS27 4.3 22.8 1.0
OE2 A:GLU26 4.3 34.7 1.0
O A:GLY31 4.4 27.2 1.0
N A:CYS23 4.4 16.4 1.0
N A:PHE24 4.5 16.2 1.0
CG A:ARG36 4.5 23.3 1.0
CA A:HIS27 4.6 24.3 1.0
CB A:ALA32 4.6 24.5 1.0
CD A:GLU26 4.6 35.9 1.0
N A:ALA32 4.9 27.7 1.0
C A:GLY31 4.9 28.2 1.0
O A:ARG36 4.9 21.9 1.0
C A:ARG36 5.0 21.7 1.0
NE A:ARG36 5.0 24.6 1.0

Gold binding site 4 out of 4 in 4ac6

Go back to Gold Binding Sites List in 4ac6
Gold binding site 4 out of 4 in the Corynebacterium Glutamicum Acnr Au Derivative Structure


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 4 of Corynebacterium Glutamicum Acnr Au Derivative Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Au1190

b:26.6
occ:1.00
CD2 A:LEU131 3.4 11.4 1.0
CD1 A:LEU153 3.7 12.4 1.0
ND2 A:ASN134 3.7 12.1 1.0
CA A:GLY78 4.0 10.8 1.0
CG A:LEU131 4.2 11.1 1.0
N A:LEU79 4.2 11.0 1.0
CG A:ARG130 4.4 10.6 1.0
C A:GLY78 4.6 10.9 1.0
CD1 A:LEU131 5.0 10.5 1.0

Reference:

J.Garcia-Nafria, M.Baumgart, J.P.Turkenburg, A.J.Wilkinson, M.Bott, K.S.Wilson. Crystal and Solution Studies Reveal That the Transcriptional Regulator Acnr of Corynebacterium Glutamicum Is Regulated By Citrate:MG2+ Binding to A Non- Canonical Pocket. J.Biol.Chem. V. 288 15800 2013.
ISSN: ISSN 0021-9258
PubMed: 23589369
DOI: 10.1074/JBC.M113.462440
Page generated: Sat Dec 12 01:53:59 2020

Last articles

Tb in 6TVY
Si in 6Y7O
Rh in 6WRM
Rh in 6WRL
Ni in 6Y8Z
Ni in 6Y8Y
Na in 6ZXZ
Na in 7ACG
Na in 6YLS
Na in 6Y8Z
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy