Gold in PDB 3swm: The Nac Domain of ANAC019 in Complex with Dna, Gold Derivative
Protein crystallography data
The structure of The Nac Domain of ANAC019 in Complex with Dna, Gold Derivative, PDB code: 3swm
was solved by
D.Welner,
L.Lo Leggio,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
46.20 /
4.25
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
68.530,
109.070,
173.940,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
25 /
30.9
|
Gold Binding Sites:
The binding sites of Gold atom in the The Nac Domain of ANAC019 in Complex with Dna, Gold Derivative
(pdb code 3swm). This binding sites where shown within
5.0 Angstroms radius around Gold atom.
In total 9 binding sites of Gold where determined in the
The Nac Domain of ANAC019 in Complex with Dna, Gold Derivative, PDB code: 3swm:
Jump to Gold binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
Gold binding site 1 out
of 9 in 3swm
Go back to
Gold Binding Sites List in 3swm
Gold binding site 1 out
of 9 in the The Nac Domain of ANAC019 in Complex with Dna, Gold Derivative
 Mono view
 Stereo pair view
|
A full contact list of Gold with other atoms in the Au binding
site number 1 of The Nac Domain of ANAC019 in Complex with Dna, Gold Derivative within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Au169
b:0.6
occ:1.00
|
SG
|
A:CYS33
|
3.6
|
0.6
|
1.0
|
AU
|
A:AU171
|
3.6
|
0.6
|
1.0
|
CB
|
A:CYS33
|
4.7
|
1.0
|
1.0
|
CD2
|
A:LEU139
|
5.0
|
0.2
|
1.0
|
|
Gold binding site 2 out
of 9 in 3swm
Go back to
Gold Binding Sites List in 3swm
Gold binding site 2 out
of 9 in the The Nac Domain of ANAC019 in Complex with Dna, Gold Derivative
 Mono view
 Stereo pair view
|
A full contact list of Gold with other atoms in the Au binding
site number 2 of The Nac Domain of ANAC019 in Complex with Dna, Gold Derivative within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Au169
b:0.5
occ:1.00
|
CG1
|
C:VAL111
|
3.0
|
0.6
|
1.0
|
SG
|
C:CYS33
|
3.1
|
0.9
|
1.0
|
CB
|
C:VAL111
|
3.6
|
0.3
|
1.0
|
CG2
|
C:VAL111
|
4.6
|
0.3
|
1.0
|
CA
|
C:VAL111
|
4.7
|
0.3
|
1.0
|
CG2
|
C:VAL29
|
4.8
|
0.0
|
1.0
|
CB
|
C:CYS33
|
4.9
|
0.3
|
1.0
|
|
Gold binding site 3 out
of 9 in 3swm
Go back to
Gold Binding Sites List in 3swm
Gold binding site 3 out
of 9 in the The Nac Domain of ANAC019 in Complex with Dna, Gold Derivative
 Mono view
 Stereo pair view
|
A full contact list of Gold with other atoms in the Au binding
site number 3 of The Nac Domain of ANAC019 in Complex with Dna, Gold Derivative within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Au170
b:0.7
occ:0.82
|
ND2
|
A:ASN61
|
3.3
|
0.4
|
1.0
|
CG1
|
A:VAL58
|
3.9
|
0.4
|
1.0
|
O
|
A:TRP57
|
4.1
|
0.4
|
1.0
|
CA
|
A:VAL58
|
4.2
|
0.2
|
1.0
|
CB
|
A:VAL58
|
4.4
|
0.6
|
1.0
|
CG
|
A:ASN61
|
4.6
|
0.6
|
1.0
|
C
|
A:TRP57
|
4.8
|
0.7
|
1.0
|
N
|
A:VAL58
|
4.8
|
0.5
|
1.0
|
|
Gold binding site 4 out
of 9 in 3swm
Go back to
Gold Binding Sites List in 3swm
Gold binding site 4 out
of 9 in the The Nac Domain of ANAC019 in Complex with Dna, Gold Derivative
 Mono view
 Stereo pair view
|
A full contact list of Gold with other atoms in the Au binding
site number 4 of The Nac Domain of ANAC019 in Complex with Dna, Gold Derivative within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Au170
b:0.8
occ:0.69
|
CD1
|
C:TRP57
|
4.9
|
0.2
|
1.0
|
|
Gold binding site 5 out
of 9 in 3swm
Go back to
Gold Binding Sites List in 3swm
Gold binding site 5 out
of 9 in the The Nac Domain of ANAC019 in Complex with Dna, Gold Derivative
 Mono view
 Stereo pair view
|
A full contact list of Gold with other atoms in the Au binding
site number 5 of The Nac Domain of ANAC019 in Complex with Dna, Gold Derivative within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Au171
b:0.6
occ:0.99
|
SG
|
A:CYS33
|
3.0
|
0.6
|
1.0
|
CG1
|
A:VAL111
|
3.1
|
0.1
|
1.0
|
AU
|
A:AU169
|
3.6
|
0.6
|
1.0
|
CB
|
A:VAL111
|
3.7
|
0.3
|
1.0
|
CG2
|
A:VAL29
|
3.8
|
0.5
|
1.0
|
CG2
|
A:VAL111
|
4.4
|
0.0
|
1.0
|
CG2
|
A:THR106
|
4.6
|
0.2
|
1.0
|
CA
|
A:VAL29
|
4.6
|
0.6
|
1.0
|
CB
|
A:VAL29
|
4.7
|
1.0
|
1.0
|
CB
|
A:CYS33
|
4.7
|
1.0
|
1.0
|
CG1
|
A:VAL29
|
5.0
|
0.7
|
1.0
|
CA
|
A:VAL111
|
5.0
|
0.9
|
1.0
|
|
Gold binding site 6 out
of 9 in 3swm
Go back to
Gold Binding Sites List in 3swm
Gold binding site 6 out
of 9 in the The Nac Domain of ANAC019 in Complex with Dna, Gold Derivative
 Mono view
 Stereo pair view
|
A full contact list of Gold with other atoms in the Au binding
site number 6 of The Nac Domain of ANAC019 in Complex with Dna, Gold Derivative within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Au171
b:0.2
occ:0.57
|
OH
|
C:TYR52
|
2.4
|
0.3
|
1.0
|
SG
|
C:CYS157
|
2.8
|
0.1
|
1.0
|
SD
|
C:MET134
|
3.1
|
0.7
|
1.0
|
OE1
|
C:GLU136
|
3.1
|
0.8
|
1.0
|
CZ
|
C:TYR52
|
3.3
|
0.5
|
1.0
|
CE1
|
C:TYR52
|
3.3
|
0.7
|
1.0
|
CG
|
C:GLU136
|
3.6
|
0.5
|
1.0
|
CB
|
C:GLU136
|
3.8
|
0.3
|
1.0
|
CD
|
C:GLU136
|
3.8
|
0.5
|
1.0
|
CD2
|
C:LEU51
|
4.2
|
0.3
|
1.0
|
CG2
|
C:VAL155
|
4.3
|
0.3
|
1.0
|
CE
|
C:MET134
|
4.4
|
0.1
|
1.0
|
CE2
|
C:TYR52
|
4.6
|
0.9
|
1.0
|
CG
|
C:MET134
|
4.6
|
1.0
|
1.0
|
CB
|
C:CYS157
|
4.6
|
0.2
|
1.0
|
CD1
|
C:TYR52
|
4.6
|
0.4
|
1.0
|
CA
|
C:GLU136
|
4.7
|
0.9
|
1.0
|
CB
|
C:VAL155
|
5.0
|
0.6
|
1.0
|
|
Gold binding site 7 out
of 9 in 3swm
Go back to
Gold Binding Sites List in 3swm
Gold binding site 7 out
of 9 in the The Nac Domain of ANAC019 in Complex with Dna, Gold Derivative
 Mono view
 Stereo pair view
|
A full contact list of Gold with other atoms in the Au binding
site number 7 of The Nac Domain of ANAC019 in Complex with Dna, Gold Derivative within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Au172
b:0.7
occ:0.50
|
OD2
|
C:ASP55
|
2.6
|
0.5
|
1.0
|
CG
|
C:ASP55
|
3.5
|
0.0
|
1.0
|
NE1
|
C:TRP57
|
3.7
|
0.0
|
1.0
|
CB
|
C:ASP55
|
4.2
|
0.1
|
1.0
|
OD1
|
C:ASP55
|
4.2
|
0.1
|
1.0
|
CE2
|
C:TRP57
|
4.5
|
0.3
|
1.0
|
CZ2
|
C:TRP57
|
4.5
|
0.1
|
1.0
|
CD1
|
C:TRP57
|
4.8
|
0.2
|
1.0
|
CG1
|
C:VAL58
|
5.0
|
0.1
|
1.0
|
|
Gold binding site 8 out
of 9 in 3swm
Go back to
Gold Binding Sites List in 3swm
Gold binding site 8 out
of 9 in the The Nac Domain of ANAC019 in Complex with Dna, Gold Derivative
 Mono view
 Stereo pair view
|
A full contact list of Gold with other atoms in the Au binding
site number 8 of The Nac Domain of ANAC019 in Complex with Dna, Gold Derivative within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Au169
b:0.1
occ:0.44
|
CG1
|
D:VAL111
|
2.9
|
0.0
|
1.0
|
SG
|
D:CYS33
|
3.0
|
0.7
|
1.0
|
CB
|
D:VAL111
|
3.5
|
0.8
|
1.0
|
CD2
|
D:LEU139
|
4.1
|
0.1
|
1.0
|
CB
|
D:CYS33
|
4.3
|
0.5
|
1.0
|
CA
|
D:VAL111
|
4.3
|
0.7
|
1.0
|
O
|
D:VAL111
|
4.6
|
0.8
|
1.0
|
CG2
|
D:VAL111
|
4.7
|
0.1
|
1.0
|
C
|
D:VAL111
|
4.9
|
0.8
|
1.0
|
|
Gold binding site 9 out
of 9 in 3swm
Go back to
Gold Binding Sites List in 3swm
Gold binding site 9 out
of 9 in the The Nac Domain of ANAC019 in Complex with Dna, Gold Derivative
 Mono view
 Stereo pair view
|
A full contact list of Gold with other atoms in the Au binding
site number 9 of The Nac Domain of ANAC019 in Complex with Dna, Gold Derivative within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Au169
b:0.1
occ:0.52
|
SG
|
B:CYS33
|
3.2
|
0.4
|
1.0
|
CG1
|
B:VAL111
|
3.4
|
1.0
|
1.0
|
CB
|
B:CYS33
|
4.1
|
0.3
|
1.0
|
CB
|
B:VAL111
|
4.3
|
0.2
|
1.0
|
CG2
|
B:VAL29
|
4.9
|
0.3
|
1.0
|
CD2
|
B:LEU139
|
5.0
|
0.5
|
1.0
|
|
Reference:
D.H.Welner,
S.Lindemose,
J.G.Grossmann,
N.E.Mollegaard,
A.N.Olsen,
C.Helgstrand,
K.Skriver,
L.Lo Leggio.
Dna Binding By the Plant-Specific Nac Transcription Factors in Crystal and Solution: A Firm Link to Wrky and Gcm Transcription Factors. Biochem.J. V. 444 395 2012.
ISSN: ISSN 0264-6021
PubMed: 22455904
DOI: 10.1042/BJ20111742
Page generated: Wed Jul 10 14:20:08 2024
|