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    PDB 1a52-4acl
      1a52
      1a79
      1a8d
      1e3b
      1e3u
      1g58
      1h9t
      1hug
      1io4
      1lj2
      1n8n
      1q07
      1rif
      1u9l
      1un1
      1ut7
      1w1d
      1yd9
      1yvl
      2aaq
      2ato
      2b8j
      2ia0
      2oar
      2oij
      2pk8
      2pqr
      2vwi
      2vyf
      2wz7
      2z7j
      3es3
      3h4k
      3h7g
      3hp3
      3k1l
      3k3f
      3k3g
      3l47
      3m6e
      3odm
      3p4z
      3p64
      3p65
      3p66
      3p68
      3swm
      3szc
      4acl

Gold in the structure of Archaeal-Type Phosphoenolpyruvate Carboxylase (pdb 3odm)






The binding sites of Gold atom in the structure of Archaeal-Type Phosphoenolpyruvate Carboxylase (pdb code 3odm). This binding sites where shown with 5.0 Angstroms radius around Gold atom.
The 3odm structure was solved by P.W.DUNTEN, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)56.8-3.0
Space groupP212121
a (A)121.420
b (A)161.580
c (A)279.980
alpha (°)90.00
beta (°)90.00
gamma (°)90.00
Rfactor (%)17.8
Rfree (%)22.3


Gold Binding Sites:

Gold binding site 1 out of 36 in 3odm


Gold binding site 1 out of 36 in 3odm
Click to enlarge
stereopicture of Gold binding site 1 out of 36 in 3odm
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Gold in the PDB 3odm. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Gold atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Gln10, A: His11, A: Pro12, A: Asp48, A: Arg82, A: Arg344, A: Auc607, A: Mli901, A: Hoh762,

conact list:


AtomAtomDistance (A)
AuO A:Gln104.42
AuN A:Gln104.91
AuC A:Gln104.35
AuNE2 A:His113.63
AuN A:His114.21
AuCB A:His114.56
AuND1 A:His113.83
AuCD2 A:His113.67
AuCE1 A:His113.74
AuCG A:His113.80
AuCA A:His114.12
AuCD A:Pro124.94
AuCB A:Asp484.25
AuOD2 A:Asp483.58
AuOD1 A:Asp484.40
AuCG A:Asp483.85
AuCD A:Arg824.37
AuCZ A:Arg824.15
AuNE A:Arg824.26
AuNH2 A:Arg824.73
AuNH1 A:Arg824.06
AuNH2 A:Arg3444.25
AuN1 A:Auc6072.97
AuAU A:Auc6070.00
AuN2 A:Auc6072.96
AuC2 A:Auc6071.80
AuC1 A:Auc6071.81
AuO8 A:Mli9014.88
AuO A:Hoh7624.45

interactive model:


Gold binding site 2 out of 36 in 3odm


Gold binding site 2 out of 36 in 3odm
Click to enlarge
stereopicture of Gold binding site 2 out of 36 in 3odm
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Gold in the PDB 3odm. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Gold atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Pro4, A: Cys5, A: Glu43, A: Lys290, A: Ile293,

conact list:


AtomAtomDistance (A)
AuC A:Pro44.54
AuCA A:Pro44.83
AuN A:Cys53.44
AuCB A:Cys53.06
AuSG A:Cys51.54
AuC A:Cys54.99
AuCA A:Cys53.83
AuOE1 A:Glu434.07
AuO A:Lys2904.62
AuN A:Lys2904.98
AuCB A:Lys2904.40
AuCD A:Lys2904.42
AuC A:Lys2904.87
AuCG A:Lys2904.03
AuCA A:Lys2904.08
AuCB A:Ile2934.56
AuCG2 A:Ile2933.84
AuCG1 A:Ile2934.81

interactive model:


Gold binding site 3 out of 36 in 3odm


Gold binding site 3 out of 36 in 3odm
Click to enlarge
stereopicture of Gold binding site 3 out of 36 in 3odm
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Gold in the PDB 3odm. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Gold atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Lys30, A: Gly38, A: Gly39, A: Leu40, A: Glu279, A: Lys283,

conact list:


AtomAtomDistance (A)
AuCE A:Lys304.52
AuCD A:Lys304.96
AuCG A:Lys304.32
AuNZ A:Lys304.27
AuO A:Gly383.49
AuC A:Gly384.42
AuO A:Gly394.26
AuN A:Gly394.77
AuC A:Gly393.97
AuCA A:Gly394.26
AuN A:Leu404.07
AuCB A:Leu404.70
AuCD1 A:Leu404.81
AuCD2 A:Leu403.41
AuCG A:Leu403.73
AuCA A:Leu404.54
AuOE1 A:Glu2793.09
AuCB A:Glu2794.69
AuOE2 A:Glu2792.86
AuCD A:Glu2793.09
AuCG A:Glu2794.18
AuCD A:Lys2834.66
AuNZ A:Lys2834.47

interactive model:


Gold binding site 4 out of 36 in 3odm


Gold binding site 4 out of 36 in 3odm
Click to enlarge
stereopicture of Gold binding site 4 out of 36 in 3odm
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 4 of Gold in the PDB 3odm. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Gold atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Asp36, A: Lys37, A: Auc631,

conact list:


AtomAtomDistance (A)
AuO A:Asp362.83
AuC A:Asp363.93
AuN A:Lys374.41
AuCB A:Lys374.46
AuCE A:Lys374.81
AuCG A:Lys374.00
AuCA A:Lys373.98
AuN1 A:Auc6312.96
AuAU A:Auc6310.00
AuN2 A:Auc6312.95
AuC2 A:Auc6311.80
AuC1 A:Auc6311.80

interactive model:


Gold binding site 5 out of 36 in 3odm


Gold binding site 5 out of 36 in 3odm
Click to enlarge
stereopicture of Gold binding site 5 out of 36 in 3odm
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 5 of Gold in the PDB 3odm. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Gold atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Met144, H: Leu95, H: Met144,

conact list:


AtomAtomDistance (A)
AuCE B:Met1443.10
AuCG B:Met1444.44
AuSD B:Met1443.27
AuCD1 H:Leu954.45
AuCE H:Met1442.45
AuCG H:Met1444.43
AuSD H:Met1443.14

interactive model:


Gold binding site 6 out of 36 in 3odm


Gold binding site 6 out of 36 in 3odm
Click to enlarge
stereopicture of Gold binding site 6 out of 36 in 3odm
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 6 of Gold in the PDB 3odm. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Gold atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Ile3, B: Pro4, B: Cys5, B: Glu43, B: Lys290, B: Ile293,

conact list:


AtomAtomDistance (A)
AuO B:Ile34.99
AuC B:Pro44.58
AuCA B:Pro44.95
AuN B:Cys53.60
AuCB B:Cys53.18
AuSG B:Cys51.56
AuCA B:Cys53.97
AuOE1 B:Glu433.62
AuOE2 B:Glu434.84
AuCD B:Glu434.63
AuO B:Lys2904.37
AuN B:Lys2904.77
AuCB B:Lys2904.27
AuCE B:Lys2904.90
AuCD B:Lys2904.81
AuC B:Lys2904.65
AuCG B:Lys2903.55
AuCA B:Lys2903.89
AuCB B:Ile2934.65
AuCG2 B:Ile2933.87

interactive model:


Gold binding site 7 out of 36 in 3odm


Gold binding site 7 out of 36 in 3odm
Click to enlarge
stereopicture of Gold binding site 7 out of 36 in 3odm
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 7 of Gold in the PDB 3odm. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Gold atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Gln10, B: His11, B: Asp48, B: Arg82, B: Arg344, B: Auc610, B: Auc640,

conact list:


AtomAtomDistance (A)
AuO B:Gln104.32
AuC B:Gln104.38
AuNE2 B:His113.68
AuN B:His114.30
AuCB B:His114.65
AuND1 B:His114.00
AuCD2 B:His113.69
AuCE1 B:His113.88
AuCG B:His113.89
AuCA B:His114.22
AuCB B:Asp484.21
AuOD2 B:Asp483.06
AuOD1 B:Asp484.02
AuCG B:Asp483.53
AuCZ B:Arg824.00
AuNE B:Arg824.89
AuNH2 B:Arg824.45
AuNH1 B:Arg823.11
AuCZ B:Arg3444.20
AuNH2 B:Arg3443.75
AuNH1 B:Arg3443.77
AuN1 B:Auc6102.97
AuAU B:Auc6100.00
AuN2 B:Auc6102.96
AuC2 B:Auc6101.80
AuC1 B:Auc6101.81
AuAU B:Auc6404.79

interactive model:


Gold binding site 8 out of 36 in 3odm


Gold binding site 8 out of 36 in 3odm
Click to enlarge
stereopicture of Gold binding site 8 out of 36 in 3odm
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 8 of Gold in the PDB 3odm. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Gold atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Lys30, B: Gly38, B: Gly39, B: Leu40, B: Glu279,

conact list:


AtomAtomDistance (A)
AuCE B:Lys303.86
AuCD B:Lys303.51
AuCG B:Lys304.49
AuNZ B:Lys303.81
AuO B:Gly383.37
AuC B:Gly384.49
AuO B:Gly394.53
AuN B:Gly394.95
AuC B:Gly394.18
AuCA B:Gly394.39
AuN B:Leu404.26
AuCB B:Leu404.77
AuCD1 B:Leu404.79
AuCD2 B:Leu402.63
AuCG B:Leu403.79
AuCA B:Leu404.75
AuOE1 B:Glu2792.53
AuCB B:Glu2794.48
AuOE2 B:Glu2793.69
AuCD B:Glu2793.12
AuCG B:Glu2793.90

interactive model:


Gold binding site 9 out of 36 in 3odm


Gold binding site 9 out of 36 in 3odm
Click to enlarge
stereopicture of Gold binding site 9 out of 36 in 3odm
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 9 of Gold in the PDB 3odm. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Gold atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Glu251, B: Glu252, B: His284, B: Hoh845,

conact list:


AtomAtomDistance (A)
AuO B:Glu2514.20
AuCB B:Glu2513.96
AuC B:Glu2514.31
AuCG B:Glu2513.74
AuCA B:Glu2514.79
AuN B:Glu2524.64
AuCA B:Glu2524.83
AuNE2 B:His2844.11
AuCB B:His2844.67
AuND1 B:His2843.38
AuCD2 B:His2844.38
AuCE1 B:His2843.50
AuCG B:His2843.96
AuO B:Hoh8454.30

interactive model:


Gold binding site 10 out of 36 in 3odm


Gold binding site 10 out of 36 in 3odm
Click to enlarge
stereopicture of Gold binding site 10 out of 36 in 3odm
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 10 of Gold in the PDB 3odm. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Gold atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: His11, B: Met46, B: Arg82, B: Leu163, B: Met197, B: Auc610,

conact list:


AtomAtomDistance (A)
AuNE2 B:His113.44
AuND1 B:His114.72
AuCD2 B:His114.77
AuCE1 B:His113.45
AuCE B:Met464.57
AuSD B:Met464.39
AuCD B:Arg824.95
AuCZ B:Arg823.17
AuNE B:Arg824.24
AuNH2 B:Arg823.16
AuNH1 B:Arg822.72
AuCD2 B:Leu1634.36
AuCE B:Met1973.26
AuSD B:Met1974.67
AuAU B:Auc6104.79

interactive model:


Gold binding site 11 out of 36 in 3odm


Gold binding site 11 out of 36 in 3odm
Click to enlarge
stereopicture of Gold binding site 11 out of 36 in 3odm
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 11 of Gold in the PDB 3odm. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Gold atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: C: Met144, D: Leu95, D: Met144,

conact list:


AtomAtomDistance (A)
AuCE C:Met1443.35
AuCG C:Met1444.63
AuSD C:Met1443.42
AuCD1 D:Leu954.32
AuCD2 D:Leu954.53
AuCE D:Met1443.39
AuCG D:Met1444.58
AuSD D:Met1443.14

interactive model:


Gold binding site 12 out of 36 in 3odm


Gold binding site 12 out of 36 in 3odm
Click to enlarge
stereopicture of Gold binding site 12 out of 36 in 3odm
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 12 of Gold in the PDB 3odm. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Gold atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: C: Lys2, C: Pro4, C: Cys5, C: Glu43, C: Lys290, C: Ile293,

conact list:


AtomAtomDistance (A)
AuCE C:Lys24.49
AuNZ C:Lys23.17
AuC C:Pro44.69
AuCA C:Pro44.91
AuN C:Cys53.66
AuCB C:Cys53.31
AuSG C:Cys51.65
AuCA C:Cys54.10
AuOE1 C:Glu433.98
AuCD C:Glu434.96
AuO C:Lys2904.96
AuN C:Lys2904.83
AuCB C:Lys2904.14
AuCE C:Lys2904.94
AuCD C:Lys2904.21
AuCG C:Lys2903.15
AuCA C:Lys2904.02
AuCB C:Ile2934.71
AuCG2 C:Ile2934.10

interactive model:


Gold binding site 13 out of 36 in 3odm


Gold binding site 13 out of 36 in 3odm
Click to enlarge
stereopicture of Gold binding site 13 out of 36 in 3odm
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 13 of Gold in the PDB 3odm. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Gold atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: C: Gln10, C: His11, C: Pro12, C: Asp48, C: Arg82, C: Arg344, C: Auc602, C: Mli901, C: Hoh745,

conact list:


AtomAtomDistance (A)
AuO C:Gln104.48
AuC C:Gln104.48
AuNE2 C:His113.63
AuN C:His114.31
AuCB C:His114.52
AuND1 C:His113.82
AuCD2 C:His113.65
AuCE1 C:His113.74
AuCG C:His113.77
AuCA C:His114.08
AuCD C:Pro124.70
AuCB C:Asp484.14
AuOD2 C:Asp483.65
AuOD1 C:Asp484.83
AuCG C:Asp484.03
AuCD C:Arg824.58
AuCZ C:Arg824.27
AuNE C:Arg824.44
AuNH2 C:Arg824.78
AuNH1 C:Arg824.17
AuNH2 C:Arg3444.21
AuN1 C:Auc6022.97
AuAU C:Auc6020.00
AuN2 C:Auc6022.95
AuC2 C:Auc6021.80
AuC1 C:Auc6021.80
AuO9 C:Mli9014.85
AuO8 C:Mli9014.96
AuO C:Hoh7454.22

interactive model:


Gold binding site 14 out of 36 in 3odm


Gold binding site 14 out of 36 in 3odm
Click to enlarge
stereopicture of Gold binding site 14 out of 36 in 3odm
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 14 of Gold in the PDB 3odm. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Gold atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: C: Lys30, C: Gly38, C: Gly39, C: Leu40, C: Glu279, C: Lys283,

conact list:


AtomAtomDistance (A)
AuCE C:Lys303.47
AuCD C:Lys303.39
AuCG C:Lys304.45
AuNZ C:Lys303.80
AuO C:Gly383.48
AuC C:Gly384.53
AuO C:Gly394.17
AuN C:Gly394.90
AuC C:Gly393.98
AuCA C:Gly394.25
AuN C:Leu404.20
AuCB C:Leu404.73
AuCD1 C:Leu404.77
AuCD2 C:Leu403.04
AuCG C:Leu403.71
AuCA C:Leu404.67
AuOE1 C:Glu2794.31
AuCB C:Glu2794.62
AuOE2 C:Glu2792.12
AuCD C:Glu2793.21
AuCG C:Glu2793.66
AuCD C:Lys2834.93
AuNZ C:Lys2834.96

interactive model:


Gold binding site 15 out of 36 in 3odm


Gold binding site 15 out of 36 in 3odm
Click to enlarge
stereopicture of Gold binding site 15 out of 36 in 3odm
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 15 of Gold in the PDB 3odm. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Gold atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: C: Glu251, C: His284,

conact list:


AtomAtomDistance (A)
AuO C:Glu2514.30
AuCB C:Glu2514.31
AuC C:Glu2514.65
AuCG C:Glu2513.81
AuNE2 C:His2843.70
AuCB C:His2844.54
AuND1 C:His2844.42
AuCD2 C:His2843.37
AuCE1 C:His2844.33
AuCG C:His2843.87

interactive model:


Gold binding site 16 out of 36 in 3odm


Gold binding site 16 out of 36 in 3odm
Click to enlarge
stereopicture of Gold binding site 16 out of 36 in 3odm
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 16 of Gold in the PDB 3odm. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Gold atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: D: Gln10, D: His11, D: Pro12, D: Asp48, D: Arg82, D: Arg344, D: Auc603, D: Mli901, D: Hoh706,

conact list:


AtomAtomDistance (A)
AuO D:Gln104.58
AuC D:Gln104.40
AuNE2 D:His113.57
AuN D:His114.11
AuCB D:His114.49
AuND1 D:His113.83
AuCD2 D:His113.57
AuCE1 D:His113.74
AuCG D:His113.74
AuCA D:His114.06
AuCD D:Pro124.93
AuCB D:Asp484.14
AuOD2 D:Asp483.65
AuOD1 D:Asp484.47
AuCG D:Asp483.88
AuCD D:Arg824.52
AuCZ D:Arg824.23
AuNE D:Arg824.45
AuNH2 D:Arg824.82
AuNH1 D:Arg823.97
AuNH2 D:Arg3444.24
AuN1 D:Auc6032.95
AuAU D:Auc6030.00
AuN2 D:Auc6032.97
AuC2 D:Auc6031.80
AuC1 D:Auc6031.79
AuO9 D:Mli9014.92
AuO D:Hoh7064.14

interactive model:


Gold binding site 17 out of 36 in 3odm


Gold binding site 17 out of 36 in 3odm
Click to enlarge
stereopicture of Gold binding site 17 out of 36 in 3odm
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 17 of Gold in the PDB 3odm. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Gold atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: D: Pro4, D: Cys5, D: Glu43, D: Lys290, D: Ile293,

conact list:


AtomAtomDistance (A)
AuC D:Pro44.45
AuCA D:Pro44.68
AuN D:Cys53.46
AuCB D:Cys53.05
AuSG D:Cys51.64
AuC D:Cys54.98
AuCA D:Cys53.85
AuOE1 D:Glu434.26
AuO D:Lys2904.44
AuN D:Lys2904.68
AuCB D:Lys2904.05
AuCD D:Lys2904.35
AuC D:Lys2904.61
AuCG D:Lys2903.63
AuCA D:Lys2903.75
AuCB D:Ile2934.81
AuCG2 D:Ile2934.18

interactive model:


Gold binding site 18 out of 36 in 3odm


Gold binding site 18 out of 36 in 3odm
Click to enlarge
stereopicture of Gold binding site 18 out of 36 in 3odm
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 18 of Gold in the PDB 3odm. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Gold atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: D: Lys30, D: Gly38, D: Gly39, D: Leu40, D: Glu279, D: Lys283,

conact list:


AtomAtomDistance (A)
AuO D:Lys304.85
AuCE D:Lys303.54
AuCD D:Lys304.11
AuCG D:Lys304.46
AuNZ D:Lys304.06
AuO D:Gly383.46
AuC D:Gly384.34
AuO D:Gly394.21
AuN D:Gly394.71
AuC D:Gly393.91
AuCA D:Gly394.19
AuN D:Leu404.00
AuCB D:Leu404.52
AuCD1 D:Leu404.56
AuCD2 D:Leu403.06
AuCG D:Leu403.50
AuCA D:Leu404.47
AuOE1 D:Glu2793.05
AuCB D:Glu2794.78
AuOE2 D:Glu2792.97
AuCD D:Glu2793.03
AuCG D:Glu2793.97
AuCD D:Lys2834.80

interactive model:


Gold binding site 19 out of 36 in 3odm


Gold binding site 19 out of 36 in 3odm
Click to enlarge
stereopicture of Gold binding site 19 out of 36 in 3odm
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 19 of Gold in the PDB 3odm. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Gold atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: D: Glu251, D: Glu252, D: His284,

conact list:


AtomAtomDistance (A)
AuO D:Glu2513.82
AuCB D:Glu2514.47
AuC D:Glu2514.35
AuCG D:Glu2514.10
AuN D:Glu2524.88
AuCB D:Glu2524.97
AuCA D:Glu2524.83
AuNE2 D:His2844.13
AuND1 D:His2843.16
AuCD2 D:His2844.74
AuCE1 D:His2843.10
AuCG D:His2844.26

interactive model:


Gold binding site 20 out of 36 in 3odm


Gold binding site 20 out of 36 in 3odm
Click to enlarge
stereopicture of Gold binding site 20 out of 36 in 3odm
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 20 of Gold in the PDB 3odm. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Gold atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: E: Lys2, E: Pro4, E: Cys5, E: Glu43, E: Lys290, E: Ile293,

conact list:


AtomAtomDistance (A)
AuNZ E:Lys24.32
AuC E:Pro44.54
AuCA E:Pro44.85
AuN E:Cys53.46
AuCB E:Cys53.04
AuSG E:Cys51.32
AuCA E:Cys53.80
AuOE1 E:Glu434.01
AuCD E:Glu434.98
AuO E:Lys2904.57
AuCB E:Lys2904.38
AuCE E:Lys2904.85
AuCD E:Lys2904.50
AuC E:Lys2904.87
AuCG E:Lys2903.44
AuCA E:Lys2904.14
AuCB E:Ile2934.85
AuCG2 E:Ile2934.10

interactive model:


Gold binding site 21 out of 36 in 3odm


Gold binding site 21 out of 36 in 3odm
Click to enlarge
stereopicture of Gold binding site 21 out of 36 in 3odm
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 21 of Gold in the PDB 3odm. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Gold atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: E: Gln10, E: His11, E: Pro12, E: Asp48, E: Arg82, E: Arg344, E: Auc606, E: Mli901, E: Hoh712,

conact list:


AtomAtomDistance (A)
AuO E:Gln104.37
AuC E:Gln104.41
AuNE2 E:His113.60
AuN E:His114.35
AuCB E:His114.63
AuND1 E:His113.93
AuCD2 E:His113.63
AuCE1 E:His113.79
AuCG E:His113.85
AuCA E:His114.24
AuCD E:Pro124.86
AuCB E:Asp484.21
AuOD2 E:Asp483.51
AuOD1 E:Asp484.32
AuCG E:Asp483.79
AuCD E:Arg824.71
AuCZ E:Arg824.27
AuNE E:Arg824.58
AuNH2 E:Arg824.80
AuNH1 E:Arg824.02
AuNH1 E:Arg3444.57
AuN1 E:Auc6062.94
AuAU E:Auc6060.00
AuN2 E:Auc6062.97
AuC2 E:Auc6061.81
AuC1 E:Auc6061.79
AuO8 E:Mli9014.83
AuO E:Hoh7124.28

interactive model:


Gold binding site 22 out of 36 in 3odm


Gold binding site 22 out of 36 in 3odm
Click to enlarge
stereopicture of Gold binding site 22 out of 36 in 3odm
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 22 of Gold in the PDB 3odm. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Gold atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: E: Lys30, E: Gly38, E: Gly39, E: Leu40, E: Glu279, E: Lys283,

conact list:


AtomAtomDistance (A)
AuCE E:Lys304.29
AuCD E:Lys303.85
AuCG E:Lys304.42
AuNZ E:Lys304.27
AuO E:Gly383.64
AuC E:Gly384.57
AuO E:Gly394.14
AuN E:Gly394.95
AuC E:Gly394.11
AuCA E:Gly394.47
AuN E:Leu404.40
AuCB E:Leu404.76
AuCD1 E:Leu404.85
AuCD2 E:Leu403.10
AuCG E:Leu403.77
AuCA E:Leu404.67
AuOE1 E:Glu2792.35
AuCB E:Glu2794.43
AuOE2 E:Glu2794.25
AuCD E:Glu2793.34
AuCG E:Glu2793.96
AuCD E:Lys2834.99

interactive model:


Gold binding site 23 out of 36 in 3odm


Gold binding site 23 out of 36 in 3odm
Click to enlarge
stereopicture of Gold binding site 23 out of 36 in 3odm
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 23 of Gold in the PDB 3odm. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Gold atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: E: Glu251, E: Glu252, E: His284, E: Hoh889,

conact list:


AtomAtomDistance (A)
AuO E:Glu2514.20
AuCB E:Glu2514.38
AuC E:Glu2514.52
AuCG E:Glu2513.94
AuN E:Glu2524.95
AuCA E:Glu2524.99
AuNE2 E:His2844.07
AuCB E:His2844.90
AuND1 E:His2843.92
AuCD2 E:His2844.25
AuCE1 E:His2843.87
AuCG E:His2844.18
AuO E:Hoh8894.32

interactive model:


Gold binding site 24 out of 36 in 3odm


Gold binding site 24 out of 36 in 3odm
Click to enlarge
stereopicture of Gold binding site 24 out of 36 in 3odm
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 24 of Gold in the PDB 3odm. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Gold atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: F: Met144, G: Leu95, G: Met144,

conact list:


AtomAtomDistance (A)
AuCE F:Met1443.12
AuCG F:Met1444.30
AuSD F:Met1442.96
AuCD1 G:Leu954.89
AuCD2 G:Leu954.85
AuCE G:Met1442.86
AuCG G:Met1444.51
AuSD G:Met1442.99

interactive model:


Gold binding site 25 out of 36 in 3odm


Gold binding site 25 out of 36 in 3odm
Click to enlarge
stereopicture of Gold binding site 25 out of 36 in 3odm
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 25 of Gold in the PDB 3odm. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Gold atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: F: Pro4, F: Cys5, F: Ser6, F: Glu43, F: Lys290, F: Ile293,

conact list:


AtomAtomDistance (A)
AuC F:Pro44.35
AuCA F:Pro44.76
AuN F:Cys53.19
AuCB F:Cys52.55
AuSG F:Cys52.63
AuC F:Cys54.65
AuCA F:Cys53.42
AuN F:Ser64.91
AuOE1 F:Glu433.99
AuO F:Lys2904.71
AuN F:Lys2904.73
AuCB F:Lys2904.24
AuCD F:Lys2904.35
AuC F:Lys2904.85
AuCG F:Lys2903.42
AuCA F:Lys2903.94
AuCB F:Ile2934.62
AuCG2 F:Ile2933.75

interactive model:


Gold binding site 26 out of 36 in 3odm


Gold binding site 26 out of 36 in 3odm
Click to enlarge
stereopicture of Gold binding site 26 out of 36 in 3odm
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 26 of Gold in the PDB 3odm. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Gold atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: F: Gln10, F: His11, F: Pro12, F: Asp48, F: Arg82, F: Arg344, F: Auc614, F: Auc641, F: Hoh874,

conact list:


AtomAtomDistance (A)
AuO F:Gln104.43
AuC F:Gln104.36
AuNE2 F:His113.32
AuN F:His114.16
AuCB F:His114.47
AuND1 F:His113.79
AuCD2 F:His113.36
AuCE1 F:His113.61
AuCG F:His113.65
AuCA F:His114.11
AuCD F:Pro124.98
AuCB F:Asp484.29
AuOD2 F:Asp482.92
AuOD1 F:Asp484.51
AuCG F:Asp483.72
AuCD F:Arg824.86
AuCZ F:Arg823.94
AuNE F:Arg824.44
AuNH2 F:Arg824.19
AuNH1 F:Arg823.81
AuCZ F:Arg3444.47
AuNH2 F:Arg3443.57
AuNH1 F:Arg3444.43
AuN1 F:Auc6142.97
AuAU F:Auc6140.00
AuN2 F:Auc6142.97
AuC2 F:Auc6141.81
AuC1 F:Auc6141.81
AuAU F:Auc6414.98
AuO F:Hoh8744.54

interactive model:


Gold binding site 27 out of 36 in 3odm


Gold binding site 27 out of 36 in 3odm
Click to enlarge
stereopicture of Gold binding site 27 out of 36 in 3odm
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 27 of Gold in the PDB 3odm. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Gold atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: F: Lys30, F: Gly38, F: Gly39, F: Leu40, F: Glu279, F: Lys283,

conact list:


AtomAtomDistance (A)
AuCE F:Lys303.22
AuCD F:Lys303.36
AuCG F:Lys304.74
AuNZ F:Lys303.74
AuO F:Gly383.58
AuC F:Gly384.64
AuO F:Gly394.27
AuN F:Gly394.99
AuC F:Gly394.07
AuCA F:Gly394.35
AuN F:Leu404.25
AuCB F:Leu404.67
AuCD1 F:Leu404.54
AuCD2 F:Leu403.23
AuCG F:Leu403.57
AuCA F:Leu404.69
AuOE1 F:Glu2793.76
AuCB F:Glu2794.31
AuOE2 F:Glu2793.42
AuCD F:Glu2793.36
AuCG F:Glu2793.66
AuCD F:Lys2834.88

interactive model:


Gold binding site 28 out of 36 in 3odm


Gold binding site 28 out of 36 in 3odm
Click to enlarge
stereopicture of Gold binding site 28 out of 36 in 3odm
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 28 of Gold in the PDB 3odm. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Gold atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: F: Glu251, F: His284, F: Hoh803,

conact list:


AtomAtomDistance (A)
AuO F:Glu2513.77
AuCB F:Glu2514.51
AuC F:Glu2514.44
AuCG F:Glu2513.92
AuNE2 F:His2843.84
AuCB F:His2844.67
AuND1 F:His2843.57
AuCD2 F:His2844.05
AuCE1 F:His2843.55
AuCG F:His2843.91
AuO F:Hoh8034.76

interactive model:


Gold binding site 29 out of 36 in 3odm


Gold binding site 29 out of 36 in 3odm
Click to enlarge
stereopicture of Gold binding site 29 out of 36 in 3odm
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 29 of Gold in the PDB 3odm. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Gold atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: F: His11, F: Met46, F: Arg82, F: Leu163, F: Met197, F: Gly239, F: Auc614,

conact list:


AtomAtomDistance (A)
AuNE2 F:His113.08
AuND1 F:His114.52
AuCD2 F:His114.43
AuCE1 F:His113.20
AuSD F:Met464.99
AuCZ F:Arg823.50
AuNE F:Arg824.81
AuNH2 F:Arg823.11
AuNH1 F:Arg823.02
AuCD2 F:Leu1634.66
AuCE F:Met1973.63
AuCA F:Gly2394.84
AuAU F:Auc6144.98
AuC2 F:Auc6144.98

interactive model:


Gold binding site 30 out of 36 in 3odm


Gold binding site 30 out of 36 in 3odm
Click to enlarge
stereopicture of Gold binding site 30 out of 36 in 3odm
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 30 of Gold in the PDB 3odm. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Gold atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: G: Gln10, G: His11, G: Pro12, G: Asp48, G: Arg82, G: Arg344, G: Auc615, G: Hoh707,

conact list:


AtomAtomDistance (A)
AuO G:Gln104.27
AuC G:Gln104.43
AuNE2 G:His113.27
AuN G:His114.43
AuCB G:His114.58
AuND1 G:His113.64
AuCD2 G:His113.46
AuCE1 G:His113.40
AuCG G:His113.69
AuCA G:His114.25
AuCD G:Pro124.89
AuCB G:Asp484.13
AuOD2 G:Asp482.79
AuOD1 G:Asp484.53
AuCG G:Asp483.64
AuCD G:Arg824.61
AuCZ G:Arg824.07
AuNE G:Arg824.35
AuNH2 G:Arg824.50
AuNH1 G:Arg823.99
AuNH2 G:Arg3444.44
AuN1 G:Auc6152.98
AuAU G:Auc6150.00
AuN2 G:Auc6152.97
AuC2 G:Auc6151.80
AuC1 G:Auc6151.82
AuO G:Hoh7074.24

interactive model:


Gold binding site 31 out of 36 in 3odm


Gold binding site 31 out of 36 in 3odm
Click to enlarge
stereopicture of Gold binding site 31 out of 36 in 3odm
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 31 of Gold in the PDB 3odm. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Gold atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: G: Lys2, G: Pro4, G: Cys5, G: Ser6, G: Glu43, G: Leu289, G: Lys290, G: Ile293,

conact list:


AtomAtomDistance (A)
AuNZ G:Lys24.19
AuC G:Pro44.34
AuCA G:Pro44.57
AuN G:Cys53.29
AuCB G:Cys53.28
AuSG G:Cys52.13
AuC G:Cys54.80
AuCA G:Cys53.82
AuN G:Ser64.94
AuOE1 G:Glu434.08
AuO G:Leu2894.91
AuO G:Lys2904.38
AuN G:Lys2904.78
AuCB G:Lys2904.14
AuCE G:Lys2904.60
AuCD G:Lys2904.38
AuC G:Lys2904.61
AuCG G:Lys2903.46
AuCA G:Lys2903.85
AuCB G:Ile2934.72
AuCG2 G:Ile2934.04
AuCG1 G:Ile2934.97

interactive model:


Gold binding site 32 out of 36 in 3odm


Gold binding site 32 out of 36 in 3odm
Click to enlarge
stereopicture of Gold binding site 32 out of 36 in 3odm
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 32 of Gold in the PDB 3odm. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Gold atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: G: Lys30, G: Gly38, G: Gly39, G: Leu40, G: Glu279, G: Lys283,

conact list:


AtomAtomDistance (A)
AuO G:Lys304.97
AuCE G:Lys303.72
AuCD G:Lys304.41
AuCG G:Lys303.99
AuNZ G:Lys303.95
AuO G:Gly383.39
AuC G:Gly384.33
AuO G:Gly394.20
AuN G:Gly394.78
AuC G:Gly394.05
AuCA G:Gly394.32
AuN G:Leu404.29
AuCB G:Leu404.86
AuCD1 G:Leu404.88
AuCD2 G:Leu403.36
AuCG G:Leu403.83
AuCA G:Leu404.77
AuOE1 G:Glu2792.50
AuCB G:Glu2794.71
AuOE2 G:Glu2793.55
AuCD G:Glu2793.28
AuCG G:Glu2794.51
AuNZ G:Lys2834.54

interactive model:


Gold binding site 33 out of 36 in 3odm


Gold binding site 33 out of 36 in 3odm
Click to enlarge
stereopicture of Gold binding site 33 out of 36 in 3odm
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 33 of Gold in the PDB 3odm. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Gold atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: H: Gln10, H: His11, H: Pro12, H: Asp48, H: Arg82, H: Arg344, H: Auc611, H: Hoh880,

conact list:


AtomAtomDistance (A)
AuO H:Gln104.19
AuC H:Gln104.28
AuNE2 H:His113.43
AuN H:His114.26
AuCB H:His114.57
AuND1 H:His113.81
AuCD2 H:His113.51
AuCE1 H:His113.63
AuCG H:His113.74
AuCA H:His114.20
AuCD H:Pro124.84
AuCB H:Asp484.11
AuOD2 H:Asp483.85
AuOD1 H:Asp484.45
AuCG H:Asp483.92
AuCD H:Arg824.55
AuCZ H:Arg824.18
AuNE H:Arg824.35
AuNH2 H:Arg824.64
AuNH1 H:Arg824.15
AuCZ H:Arg3444.98
AuNH2 H:Arg3444.52
AuN1 H:Auc6112.98
AuAU H:Auc6110.00
AuN2 H:Auc6112.96
AuC2 H:Auc6111.80
AuC1 H:Auc6111.81
AuO H:Hoh8804.02

interactive model:


Gold binding site 34 out of 36 in 3odm


Gold binding site 34 out of 36 in 3odm
Click to enlarge
stereopicture of Gold binding site 34 out of 36 in 3odm
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 34 of Gold in the PDB 3odm. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Gold atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: H: Lys2, H: Pro4, H: Cys5, H: Glu43, H: Lys290, H: Ile293,

conact list:


AtomAtomDistance (A)
AuNZ H:Lys24.19
AuC H:Pro44.42
AuCA H:Pro44.69
AuN H:Cys53.40
AuCB H:Cys53.04
AuSG H:Cys52.03
AuC H:Cys54.87
AuCA H:Cys53.79
AuOE1 H:Glu433.53
AuCD H:Glu434.67
AuO H:Lys2904.52
AuN H:Lys2904.81
AuCB H:Lys2904.18
AuCD H:Lys2904.57
AuC H:Lys2904.68
AuCG H:Lys2903.39
AuCA H:Lys2903.89
AuCB H:Ile2934.85
AuCG2 H:Ile2934.26

interactive model:


Gold binding site 35 out of 36 in 3odm


Gold binding site 35 out of 36 in 3odm
Click to enlarge
stereopicture of Gold binding site 35 out of 36 in 3odm
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 35 of Gold in the PDB 3odm. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Gold atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: H: Lys30, H: Gly38, H: Gly39, H: Leu40, H: Glu279, H: Lys283,

conact list:


AtomAtomDistance (A)
AuO H:Lys304.89
AuCE H:Lys304.20
AuCD H:Lys303.56
AuCG H:Lys303.92
AuNZ H:Lys304.37
AuO H:Gly382.74
AuC H:Gly383.96
AuO H:Gly394.19
AuN H:Gly394.65
AuC H:Gly394.06
AuCA H:Gly394.37
AuN H:Leu404.28
AuCB H:Leu404.80
AuCD1 H:Leu404.66
AuCD2 H:Leu403.38
AuCG H:Leu403.72
AuCA H:Leu404.78
AuOE1 H:Glu2791.71
AuOE2 H:Glu2793.90
AuCD H:Glu2792.90
AuCG H:Glu2793.58
AuNZ H:Lys2834.90

interactive model:


Gold binding site 36 out of 36 in 3odm


Gold binding site 36 out of 36 in 3odm
Click to enlarge
stereopicture of Gold binding site 36 out of 36 in 3odm
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 36 of Gold in the PDB 3odm. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Gold atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: H: Glu251, H: Glu252, H: His284,

conact list:


AtomAtomDistance (A)
AuO H:Glu2513.96
AuCB H:Glu2514.15
AuC H:Glu2514.29
AuCG H:Glu2513.71
AuCA H:Glu2514.89
AuN H:Glu2524.73
AuCA H:Glu2524.79
AuNE2 H:His2844.09
AuCB H:His2844.79
AuND1 H:His2843.31
AuCD2 H:His2844.46
AuCE1 H:His2843.38
AuCG H:His2844.02

interactive model:




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