Gold in PDB 8dxy: [T:Au+:T--(PH11-PH7; 180S)] Metal-Mediated Dna Base Pair in Tensegrity Triangle Grown at pH 11 and Soaked in pH 7 For 180S

The structure of [T:Au+:T--(PH11-PH7; 180S)] Metal-Mediated Dna Base Pair in Tensegrity Triangle Grown at pH 11 and Soaked in pH 7 For 180S, PDB code: 8dxy was solved by B.Lu, S.Vecchioni, N.C.Seeman, R.Sha, Y.P.Ohayon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.04 / 4.87
Space group	H 3
Cell size a, b, c (Å), α, β, γ (°)	107.523, 107.523, 90.167, 90, 90, 120
R / Rfree (%)	17.9 / 22.6

The binding sites of Gold atom in the [T:Au+:T--(PH11-PH7; 180S)] Metal-Mediated Dna Base Pair in Tensegrity Triangle Grown at pH 11 and Soaked in pH 7 For 180S (pdb code 8dxy). This binding sites where shown within 5.0 Angstroms radius around Gold atom.
In total 2 binding sites of Gold where determined in the [T:Au+:T--(PH11-PH7; 180S)] Metal-Mediated Dna Base Pair in Tensegrity Triangle Grown at pH 11 and Soaked in pH 7 For 180S, PDB code: 8dxy:
Jump to Gold binding site number: 1; 2;

Gold binding site 1 out of 2 in the [T:Au+:T--(PH11-PH7; 180S)] Metal-Mediated Dna Base Pair in Tensegrity Triangle Grown at pH 11 and Soaked in pH 7 For 180S


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 1 of [T:Au+:T--(PH11-PH7; 180S)] Metal-Mediated Dna Base Pair in Tensegrity Triangle Grown at pH 11 and Soaked in pH 7 For 180S within 5.0Å range: probe atom residue distance (Å) B Occ B:Au101 b:296.9 occ:0.15 O4 A:DT12 2.3 306.0 1.0 N3 B:DT4 2.4 315.9 1.0 N3 A:DT12 2.5 294.0 1.0 C4 A:DT12 2.7 301.4 1.0 C2 B:DA5 3.2 314.2 1.0 C2 B:DT4 3.2 316.7 1.0 O2 B:DT4 3.2 310.5 1.0 C4 B:DT4 3.3 318.8 1.0 N1 B:DA5 3.4 316.8 1.0 O4 B:DT4 3.4 320.8 1.0 AU B:AU102 3.6 342.9 0.2 N3 B:DA5 3.6 316.3 1.0 C2 A:DT12 3.7 297.0 1.0 N1 B:DA3 3.7 313.4 1.0 N3 A:DT13 3.8 314.1 1.0 C6 B:DA5 4.0 318.7 1.0 C4 A:DT13 4.1 315.0 1.0 C2 A:DT13 4.1 310.2 1.0 O2 A:DT12 4.1 291.6 1.0 C5 A:DT12 4.1 304.7 1.0 C4 B:DA5 4.2 318.6 1.0 C6 B:DA3 4.2 313.7 1.0 C2 B:DA3 4.3 311.9 1.0 N6 B:DA3 4.3 314.4 1.0 C5 B:DA5 4.4 319.6 1.0 O4 A:DT13 4.4 315.6 1.0 O2 A:DT13 4.4 306.6 1.0 N1 B:DT4 4.5 322.8 1.0 C5 B:DT4 4.6 319.4 1.0 N1 A:DT13 4.7 310.0 1.0 C5 A:DT13 4.7 316.1 1.0 N6 B:DA5 4.8 317.0 1.0 N1 A:DT12 4.8 302.9 1.0 C6 A:DT12 4.9 305.1 1.0 C6 A:DT13 5.0 313.6 1.0

Gold binding site 2 out of 2 in the [T:Au+:T--(PH11-PH7; 180S)] Metal-Mediated Dna Base Pair in Tensegrity Triangle Grown at pH 11 and Soaked in pH 7 For 180S


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 2 of [T:Au+:T--(PH11-PH7; 180S)] Metal-Mediated Dna Base Pair in Tensegrity Triangle Grown at pH 11 and Soaked in pH 7 For 180S within 5.0Å range: probe atom residue distance (Å) B Occ B:Au102 b:342.9 occ:0.25 O4 B:DT4 1.7 320.8 1.0 O4 A:DT12 2.7 306.0 1.0 N6 B:DA3 2.8 314.4 1.0 C4 B:DT4 2.9 318.8 1.0 C6 B:DA3 3.5 313.7 1.0 AU B:AU101 3.6 296.9 0.1 N3 B:DT4 3.6 315.9 1.0 O4 A:DT11 3.8 314.1 1.0 C4 A:DT12 3.9 301.4 1.0 C5 B:DT4 4.1 319.4 1.0 N1 B:DA5 4.1 316.8 1.0 C5 B:DA3 4.2 312.9 1.0 N1 B:DA3 4.2 313.4 1.0 N6 B:DA5 4.2 317.0 1.0 C7 B:DT4 4.3 317.9 1.0 O4 A:DT13 4.3 315.6 1.0 C4 A:DT11 4.4 313.1 1.0 C7 A:DT12 4.4 309.5 1.0 N7 B:DA3 4.5 311.2 1.0 C6 B:DA5 4.5 318.7 1.0 C5 A:DT12 4.7 304.7 1.0 N3 A:DT12 4.9 294.0 1.0 C2 B:DA5 5.0 314.2 1.0 C5 A:DT11 5.0 315.0 1.0 C2 B:DT4 5.0 316.7 1.0 N3 A:DT11 5.0 308.1 1.0

B.Lu, Y.P.Ohayon, R.Sha, K.Woloszyn, L.Rothschild, S.Wind, W.Hendrickson, C.Mao, N.C.Seeman, S.Vecchioni. Crystallographic pH Titration of Silver and Mercury Mediated Dna Base Pairs To Be Published.