Gold in PDB 7vip: Crystal Structure of Au(10EQ)-Apo-R168H/L169C-Rhlfr

The structure of Crystal Structure of Au(10EQ)-Apo-R168H/L169C-Rhlfr, PDB code: 7vip was solved by C.Lu, X.Peng, B.Maity, N.Ito, S.Abe, T.Ueno, D.Lu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	12.88 / 1.90
Space group	F 4 3 2
Cell size a, b, c (Å), α, β, γ (°)	182.126, 182.126, 182.126, 90, 90, 90
R / Rfree (%)	18.1 / 21.2

The structure of Crystal Structure of Au(10EQ)-Apo-R168H/L169C-Rhlfr also contains other interesting chemical elements:

Cadmium

(Cd)

3 atoms

The binding sites of Gold atom in the Crystal Structure of Au(10EQ)-Apo-R168H/L169C-Rhlfr (pdb code 7vip). This binding sites where shown within 5.0 Angstroms radius around Gold atom.
In total 2 binding sites of Gold where determined in the Crystal Structure of Au(10EQ)-Apo-R168H/L169C-Rhlfr, PDB code: 7vip:
Jump to Gold binding site number: 1; 2;

Gold binding site 1 out of 2 in the Crystal Structure of Au(10EQ)-Apo-R168H/L169C-Rhlfr


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 1 of Crystal Structure of Au(10EQ)-Apo-R168H/L169C-Rhlfr within 5.0Å range: probe atom residue distance (Å) B Occ A:Au205 b:45.2 occ:0.20 O A:HOH447 2.3 15.7 1.0 SG A:CYS126 3.2 13.6 1.0 CA A:PRO123 3.4 6.0 1.0 O A:HOH414 3.5 35.6 1.0 CB A:CYS126 3.5 9.9 1.0 N A:PRO123 3.8 6.2 1.0 O A:ASP122 3.8 6.0 1.0 CB A:PRO123 3.9 5.9 1.0 AU A:AU207 3.9 41.3 0.2 C A:ASP122 3.9 6.6 1.0 CA A:SER118 4.2 8.8 0.5 CA A:SER118 4.2 9.1 0.5 N A:ASP122 4.4 6.8 1.0 O A:GLY117 4.4 8.9 1.0 CD A:PRO123 4.5 6.0 1.0 OG A:SER118 4.6 9.2 0.5 C A:PRO123 4.6 5.9 1.0 N A:SER118 4.6 8.8 0.5 CB A:SER118 4.7 8.8 0.5 N A:SER118 4.7 8.6 0.5 OG A:SER118 4.7 8.2 0.5 C A:GLY117 4.7 9.1 1.0 O A:PRO123 4.8 5.3 1.0 CA A:ASP122 4.8 6.6 1.0 CB A:SER118 4.9 9.3 0.5 CG A:PRO123 4.9 6.0 1.0 CA A:CYS126 4.9 10.2 1.0 C A:ALA121 5.0 7.1 1.0

Gold binding site 2 out of 2 in the Crystal Structure of Au(10EQ)-Apo-R168H/L169C-Rhlfr


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 2 of Crystal Structure of Au(10EQ)-Apo-R168H/L169C-Rhlfr within 5.0Å range: probe atom residue distance (Å) B Occ A:Au207 b:41.3 occ:0.20 CE1 A:HIS114 2.8 7.5 1.0 NE2 A:HIS114 3.1 8.5 1.0 OE2 A:GLU130 3.1 18.5 1.0 CB A:CYS126 3.5 9.9 1.0 SG A:CYS126 3.9 13.6 1.0 AU A:AU205 3.9 45.2 0.2 ND1 A:HIS114 4.0 8.3 1.0 OG A:SER118 4.0 9.2 0.5 CD A:GLU130 4.3 16.1 1.0 CD2 A:HIS114 4.4 7.3 1.0 CD A:CD206 4.6 36.3 0.5 CG A:HIS114 4.8 8.0 1.0 CA A:CYS126 4.8 10.2 1.0 OG A:SER118 4.9 8.2 0.5 CB A:SER118 4.9 8.8 0.5

C.Lu, B.Maity, X.Peng, N.Ito, S.Abe, X.Sheng, T.Ueno, D.Lu. Design of A Gold Clustering Site in An Engineered Apo-Ferritin Cage Commun Chem V. 5 2022.
ISSN: ESSN 2399-3669
DOI: 10.1038/S42004-022-00651-1