Gold in PDB 8dxx: [T:Au+:T--(PH11-PH7; 45S)] Metal-Mediated Dna Base Pair in Tensegrity Triangle Grown at pH 11 and Soaked in pH 7 For 45S

The structure of [T:Au+:T--(PH11-PH7; 45S)] Metal-Mediated Dna Base Pair in Tensegrity Triangle Grown at pH 11 and Soaked in pH 7 For 45S, PDB code: 8dxx was solved by B.Lu, S.Vecchioni, N.C.Seeman, R.Sha, Y.P.Ohayon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	32.67 / 4.07
Space group	H 3
Cell size a, b, c (Å), α, β, γ (°)	106.738, 106.738, 92.197, 90, 90, 120
R / Rfree (%)	21.6 / 23.7

The binding sites of Gold atom in the [T:Au+:T--(PH11-PH7; 45S)] Metal-Mediated Dna Base Pair in Tensegrity Triangle Grown at pH 11 and Soaked in pH 7 For 45S (pdb code 8dxx). This binding sites where shown within 5.0 Angstroms radius around Gold atom.
In total 2 binding sites of Gold where determined in the [T:Au+:T--(PH11-PH7; 45S)] Metal-Mediated Dna Base Pair in Tensegrity Triangle Grown at pH 11 and Soaked in pH 7 For 45S, PDB code: 8dxx:
Jump to Gold binding site number: 1; 2;

Gold binding site 1 out of 2 in the [T:Au+:T--(PH11-PH7; 45S)] Metal-Mediated Dna Base Pair in Tensegrity Triangle Grown at pH 11 and Soaked in pH 7 For 45S


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 1 of [T:Au+:T--(PH11-PH7; 45S)] Metal-Mediated Dna Base Pair in Tensegrity Triangle Grown at pH 11 and Soaked in pH 7 For 45S within 5.0Å range: probe atom residue distance (Å) B Occ B:Au101 b:174.5 occ:0.20 N3 B:DT4 2.4 182.9 1.0 N3 A:DT12 2.4 185.8 1.0 O4 A:DT12 2.7 180.8 1.0 C4 A:DT12 2.9 184.3 1.0 C2 B:DA5 3.1 193.1 1.0 C2 B:DT4 3.2 186.1 1.0 O2 B:DT4 3.2 183.9 1.0 N1 B:DA5 3.2 193.5 1.0 C4 B:DT4 3.2 183.8 1.0 O4 B:DT4 3.3 184.3 1.0 N3 B:DA5 3.4 198.2 1.0 C2 A:DT12 3.6 187.5 1.0 C6 B:DA5 3.6 197.5 1.0 C4 B:DA5 3.7 199.2 1.0 O2 A:DT12 3.8 188.2 1.0 N1 B:DA3 3.9 173.7 1.0 C5 B:DA5 3.9 198.3 1.0 N3 A:DT13 4.2 189.9 1.0 AU B:AU102 4.2 197.3 0.3 C6 B:DA3 4.3 172.6 1.0 C2 B:DA3 4.3 177.3 1.0 C5 A:DT12 4.4 189.4 1.0 N6 B:DA5 4.4 196.1 1.0 N6 B:DA3 4.5 171.2 1.0 N1 B:DT4 4.5 189.3 1.0 C5 B:DT4 4.6 185.8 1.0 C4 A:DT13 4.6 188.9 1.0 C2 A:DT13 4.6 189.2 1.0 N9 B:DA5 4.6 196.9 1.0 N1 A:DT12 4.7 190.0 1.0 O4 A:DT13 4.8 187.8 1.0 O2 A:DT13 4.8 187.3 1.0 N7 B:DA5 4.9 194.4 1.0 O4 A:DT11 4.9 191.7 1.0 N3 A:DT11 4.9 191.0 1.0

Gold binding site 2 out of 2 in the [T:Au+:T--(PH11-PH7; 45S)] Metal-Mediated Dna Base Pair in Tensegrity Triangle Grown at pH 11 and Soaked in pH 7 For 45S


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 2 of [T:Au+:T--(PH11-PH7; 45S)] Metal-Mediated Dna Base Pair in Tensegrity Triangle Grown at pH 11 and Soaked in pH 7 For 45S within 5.0Å range: probe atom residue distance (Å) B Occ B:Au102 b:197.3 occ:0.28 O4 B:DT4 1.8 184.3 1.0 C4 B:DT4 3.1 183.8 1.0 N6 B:DA3 3.4 171.2 1.0 O4 A:DT12 3.4 180.8 1.0 O4 A:DT11 3.8 191.7 1.0 N6 B:DA5 3.9 196.1 1.0 C6 B:DA3 4.0 172.6 1.0 C7 B:DT4 4.0 188.5 1.0 C5 B:DT4 4.0 185.8 1.0 N3 B:DT4 4.0 182.9 1.0 N7 B:DA3 4.2 174.8 1.0 AU B:AU101 4.2 174.5 0.2 C5 B:DA3 4.3 174.3 1.0 C6 B:DA5 4.5 197.5 1.0 N1 B:DA5 4.5 193.5 1.0 C4 A:DT11 4.6 194.6 1.0 C4 A:DT12 4.7 184.3 1.0 N1 B:DA3 4.9 173.7 1.0

B.Lu, Y.P.Ohayon, R.Sha, K.Woloszyn, L.Rothschild, S.Wind, W.Hendrickson, C.Mao, N.C.Seeman, S.Vecchioni. Crystallographic pH Titration of Silver and Mercury Mediated Dna Base Pairs To Be Published.