Gold in PDB 7vis: Crystal Structure of Au(200EQ)-Apo-R168H/L169C-Rhlfr

The structure of Crystal Structure of Au(200EQ)-Apo-R168H/L169C-Rhlfr, PDB code: 7vis was solved by C.Lu, X.Peng, B.Maity, N.Ito, S.Abe, T.Ueno, D.Lu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.69 / 1.85
Space group	F 4 3 2
Cell size a, b, c (Å), α, β, γ (°)	182.594, 182.594, 182.594, 90, 90, 90
R / Rfree (%)	16.6 / 19.8

The structure of Crystal Structure of Au(200EQ)-Apo-R168H/L169C-Rhlfr also contains other interesting chemical elements:

Chlorine	(Cl)	2 atoms
Cadmium	(Cd)	3 atoms

The binding sites of Gold atom in the Crystal Structure of Au(200EQ)-Apo-R168H/L169C-Rhlfr (pdb code 7vis). This binding sites where shown within 5.0 Angstroms radius around Gold atom.
In total 7 binding sites of Gold where determined in the Crystal Structure of Au(200EQ)-Apo-R168H/L169C-Rhlfr, PDB code: 7vis:
Jump to Gold binding site number: 1; 2; 3; 4; 5; 6; 7;

Gold binding site 1 out of 7 in the Crystal Structure of Au(200EQ)-Apo-R168H/L169C-Rhlfr


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 1 of Crystal Structure of Au(200EQ)-Apo-R168H/L169C-Rhlfr within 5.0Å range: probe atom residue distance (Å) B Occ A:Au202 b:31.1 occ:0.65 ND1 A:HIS168 2.0 34.8 1.0 SG A:CYS169 2.1 37.6 1.0 CG A:HIS168 3.0 33.1 1.0 N A:CYS169 3.1 24.7 1.0 CE1 A:HIS168 3.1 37.6 1.0 AU A:AU205 3.2 21.8 0.3 CB A:HIS168 3.2 27.8 1.0 C A:HIS168 3.2 26.6 1.0 CB A:CYS169 3.3 30.2 1.0 O A:HOH430 3.3 51.4 1.0 CA A:CYS169 3.4 25.1 1.0 O A:HIS168 3.6 27.8 1.0 AU A:AU203 3.6 23.8 0.3 CA A:HIS168 3.8 26.7 1.0 CD2 A:HIS168 4.1 32.4 1.0 NE2 A:HIS168 4.2 35.5 1.0 CD2 A:LEU165 4.4 19.9 1.0 O A:LEU165 4.7 16.9 1.0 N A:HIS168 4.8 22.3 1.0 CE2 A:TYR164 4.9 20.2 1.0 C A:CYS169 4.9 25.2 1.0

Gold binding site 2 out of 7 in the Crystal Structure of Au(200EQ)-Apo-R168H/L169C-Rhlfr


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 2 of Crystal Structure of Au(200EQ)-Apo-R168H/L169C-Rhlfr within 5.0Å range: probe atom residue distance (Å) B Occ A:Au203 b:23.8 occ:0.30 AU A:AU205 1.8 21.8 0.3 SG A:CYS169 2.6 37.6 1.0 CB A:CYS169 2.9 30.2 1.0 O A:HOH430 3.0 51.4 1.0 CA A:CYS169 3.3 25.1 1.0 AU A:AU202 3.6 31.1 0.7 O A:CYS169 4.1 32.4 1.0 C A:CYS169 4.2 25.2 1.0 N A:CYS169 4.3 24.7 1.0 O A:HIS168 4.7 27.8 1.0 C A:HIS168 4.9 26.6 1.0

Gold binding site 3 out of 7 in the Crystal Structure of Au(200EQ)-Apo-R168H/L169C-Rhlfr


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 3 of Crystal Structure of Au(200EQ)-Apo-R168H/L169C-Rhlfr within 5.0Å range: probe atom residue distance (Å) B Occ A:Au204 b:12.2 occ:0.70 SG A:CYS48 2.1 10.4 1.0 CL A:CL214 2.2 13.1 0.7 O A:CYS48 3.2 8.0 1.0 C A:GLY34 3.3 6.8 1.0 O A:GLY34 3.4 6.7 1.0 CB A:CYS48 3.5 9.5 1.0 CA A:GLY34 3.5 6.5 1.0 AU A:AU206 3.5 15.3 0.9 C A:CYS48 3.6 9.2 1.0 CA A:CYS48 3.8 9.5 1.0 N A:PHE35 3.9 6.5 1.0 CB A:ARG52 3.9 11.7 1.0 CD A:ARG52 4.4 25.6 1.0 CA A:PHE35 4.5 6.6 1.0 CG A:ARG52 4.6 17.0 1.0 N A:HIS49 4.6 9.2 1.0 CA A:ARG52 4.7 9.3 1.0 CD2 A:PHE35 4.7 8.4 1.0 N A:ARG52 4.7 7.0 1.0 CE2 A:PHE35 4.7 9.5 1.0 CG A:PHE35 4.7 7.7 1.0 N A:GLY34 4.9 6.2 1.0 CD1 A:PHE35 4.9 7.6 1.0 CZ A:PHE35 4.9 9.0 1.0 CE1 A:PHE35 5.0 8.2 1.0 CB A:ASP38 5.0 9.3 1.0

Gold binding site 4 out of 7 in the Crystal Structure of Au(200EQ)-Apo-R168H/L169C-Rhlfr


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 4 of Crystal Structure of Au(200EQ)-Apo-R168H/L169C-Rhlfr within 5.0Å range: probe atom residue distance (Å) B Occ A:Au205 b:21.8 occ:0.30 AU A:AU203 1.8 23.8 0.3 SG A:CYS169 2.1 37.6 1.0 AU A:AU202 3.2 31.1 0.7 CB A:CYS169 3.3 30.2 1.0 O A:HOH430 3.8 51.4 1.0 CA A:CYS169 4.2 25.1 1.0 ND1 A:HIS168 4.9 34.8 1.0 N A:CYS169 4.9 24.7 1.0

Gold binding site 5 out of 7 in the Crystal Structure of Au(200EQ)-Apo-R168H/L169C-Rhlfr


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 5 of Crystal Structure of Au(200EQ)-Apo-R168H/L169C-Rhlfr within 5.0Å range: probe atom residue distance (Å) B Occ A:Au206 b:15.3 occ:0.90 ND1 A:HIS49 2.0 19.0 1.0 SG A:CYS48 2.4 10.4 1.0 CE1 A:HIS49 2.7 22.9 1.0 N A:HIS49 3.1 9.2 1.0 OE1 A:GLU45 3.1 27.3 1.0 CG A:HIS49 3.1 18.8 1.0 CB A:CYS48 3.2 9.5 1.0 C A:CYS48 3.2 9.2 1.0 CA A:HIS49 3.4 9.7 1.0 AU A:AU204 3.5 12.2 0.7 O A:GLU45 3.6 11.4 1.0 CB A:HIS49 3.6 11.9 1.0 CD A:GLU45 3.7 24.3 1.0 O A:CYS48 3.8 8.0 1.0 CA A:CYS48 3.8 9.5 1.0 NE2 A:HIS49 4.0 27.7 1.0 CG A:GLU45 4.0 20.1 1.0 CD2 A:HIS49 4.1 23.1 1.0 NH1 A:ARG52 4.3 51.5 1.0 CD A:ARG52 4.4 25.6 1.0 OE2 A:GLU45 4.5 23.2 1.0 C A:GLU45 4.7 11.7 1.0 CB A:ARG52 4.8 11.7 1.0 N A:CYS48 4.8 8.6 1.0 C A:HIS49 4.8 8.8 1.0

Gold binding site 6 out of 7 in the Crystal Structure of Au(200EQ)-Apo-R168H/L169C-Rhlfr


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 6 of Crystal Structure of Au(200EQ)-Apo-R168H/L169C-Rhlfr within 5.0Å range: probe atom residue distance (Å) B Occ A:Au207 b:19.7 occ:0.80 ND1 A:HIS114 2.1 11.1 1.0 SG A:CYS126 2.4 19.0 1.0 CE1 A:HIS114 2.9 13.1 1.0 CG A:HIS114 3.0 11.5 1.0 CB A:CYS126 3.2 16.1 1.0 O A:HIS114 3.3 9.2 1.0 CB A:HIS114 3.4 11.4 1.0 CA A:HIS114 3.6 9.7 1.0 AU A:AU208 3.7 14.8 0.6 C A:HIS114 3.8 9.8 1.0 CA A:CYS126 3.8 13.4 1.0 NE2 A:HIS114 4.0 12.6 1.0 CD2 A:HIS114 4.1 11.4 1.0 N A:SER118 4.3 13.2 1.0 CB A:SER118 4.4 15.3 1.0 N A:CYS126 4.6 11.6 1.0 CA A:SER118 4.7 13.9 1.0 C A:GLY117 4.9 12.6 1.0 N A:HIS114 5.0 9.5 1.0

Gold binding site 7 out of 7 in the Crystal Structure of Au(200EQ)-Apo-R168H/L169C-Rhlfr


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 7 of Crystal Structure of Au(200EQ)-Apo-R168H/L169C-Rhlfr within 5.0Å range: probe atom residue distance (Å) B Occ A:Au208 b:14.8 occ:0.60 SG A:CYS126 2.0 19.0 1.0 CL A:CL213 2.3 8.2 0.6 CB A:CYS126 3.4 16.1 1.0 O A:ASP122 3.5 7.4 1.0 AU A:AU207 3.7 19.7 0.8 C A:ASP122 3.7 8.1 1.0 CA A:PRO123 3.8 7.7 1.0 CA A:SER118 3.8 13.9 1.0 O A:GLY117 3.8 12.2 1.0 N A:SER118 3.9 13.2 1.0 N A:PRO123 3.9 8.6 1.0 C A:GLY117 3.9 12.6 1.0 N A:ASP122 4.1 10.8 1.0 CB A:SER118 4.4 15.3 1.0 CA A:ASP122 4.6 9.1 1.0 CA A:CYS126 4.6 13.4 1.0 CB A:PRO123 4.6 8.7 1.0 N A:CYS126 4.7 11.6 1.0 C A:PRO123 4.8 7.9 1.0 CD A:PRO123 4.8 9.0 1.0 OG A:SER118 4.9 18.9 1.0 CA A:GLY117 4.9 12.1 1.0 O A:PRO123 5.0 7.9 1.0 C A:ALA121 5.0 11.9 1.0 C A:SER118 5.0 12.7 1.0

C.Lu, B.Maity, X.Peng, N.Ito, S.Abe, X.Sheng, T.Ueno, D.Lu. Design of A Gold Clustering Site in An Engineered Apo-Ferritin Cage Commun Chem V. 5 2022.
ISSN: ESSN 2399-3669
DOI: 10.1038/S42004-022-00651-1