Gold in PDB 7ul8: [T:Au+:T--pH 11] Metal-Mediated Dna Base Pair in Tensegrity Triangle

The structure of [T:Au+:T--pH 11] Metal-Mediated Dna Base Pair in Tensegrity Triangle, PDB code: 7ul8 was solved by B.Lu, S.Vecchioni, N.C.Seeman, R.Sha, Y.P.Ohayon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	41.18 / 4.22
Space group	H 3
Cell size a, b, c (Å), α, β, γ (°)	106.706, 106.706, 90.79, 90, 90, 120
R / Rfree (%)	25.7 / 34

The binding sites of Gold atom in the [T:Au+:T--pH 11] Metal-Mediated Dna Base Pair in Tensegrity Triangle (pdb code 7ul8). This binding sites where shown within 5.0 Angstroms radius around Gold atom.
In total 2 binding sites of Gold where determined in the [T:Au+:T--pH 11] Metal-Mediated Dna Base Pair in Tensegrity Triangle, PDB code: 7ul8:
Jump to Gold binding site number: 1; 2;

Gold binding site 1 out of 2 in the [T:Au+:T--pH 11] Metal-Mediated Dna Base Pair in Tensegrity Triangle


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 1 of [T:Au+:T--pH 11] Metal-Mediated Dna Base Pair in Tensegrity Triangle within 5.0Å range: probe atom residue distance (Å) B Occ A:Au101 b:147.3 occ:0.50 O4 A:DT12 2.1 93.8 1.0 N3 B:DT4 2.6 195.4 1.0 C4 A:DT12 2.8 93.8 1.0 N3 A:DT12 2.8 93.8 1.0 O4 B:DT4 2.9 170.3 1.0 C4 B:DT4 3.1 175.4 1.0 N1 B:DA5 3.6 216.5 1.0 C2 B:DA5 3.7 226.8 1.0 C2 B:DT4 3.7 200.5 1.0 N1 B:DA3 3.8 93.8 1.0 N6 B:DA3 3.9 93.8 1.0 C6 B:DA3 3.9 93.8 1.0 O2 B:DT4 3.9 216.6 1.0 C6 B:DA5 4.0 194.2 1.0 C2 A:DT12 4.1 93.8 1.0 O4 A:DT11 4.2 121.5 1.0 N3 B:DA5 4.2 174.4 1.0 C5 A:DT12 4.2 93.8 1.0 N3 A:DT11 4.3 128.4 1.0 N3 A:DT13 4.3 93.8 1.0 C2 B:DA3 4.4 93.8 1.0 C5 B:DA5 4.4 181.9 1.0 C4 B:DA5 4.5 173.9 1.0 N6 B:DA5 4.5 199.4 1.0 C4 A:DT11 4.5 133.7 1.0 C5 B:DT4 4.6 163.9 1.0 O4 A:DT13 4.6 93.8 1.0 O2 A:DT12 4.6 93.8 1.0 C4 A:DT13 4.6 93.8 1.0 C5 B:DA3 4.7 93.8 1.0 N1 B:DT4 4.9 180.6 1.0 C7 A:DT12 5.0 93.8 1.0 C2 A:DT13 5.0 93.8 1.0

Gold binding site 2 out of 2 in the [T:Au+:T--pH 11] Metal-Mediated Dna Base Pair in Tensegrity Triangle


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 2 of [T:Au+:T--pH 11] Metal-Mediated Dna Base Pair in Tensegrity Triangle within 5.0Å range: probe atom residue distance (Å) B Occ B:Au101 b:149.0 occ:0.30 O4 B:DT4 3.2 170.3 1.0 N7 B:DA3 4.1 93.8 1.0 N6 B:DA3 4.2 93.8 1.0 C4 B:DT4 4.3 175.4 1.0 O4 A:DT11 4.3 121.5 1.0 C7 B:DT4 4.3 142.3 1.0 C5 B:DA3 4.7 93.8 1.0 C6 B:DA3 4.8 93.8 1.0 C5 B:DT4 4.9 163.9 1.0 C7 A:DT11 4.9 160.5 1.0 O4 A:DT12 5.0 93.8 1.0 C8 B:DA3 5.0 93.8 1.0

S.Vecchioni, B.Lu, W.Livernois, Y.P.Ohayon, J.B.Yoder, C.F.Yang, K.Woloszyn, W.Bernfeld, M.P.Anantram, J.W.Canary, W.A.Hendrickson, L.J.Rothschild, C.Mao, S.J.Wind, N.C.Seeman, R.Sha. Metal-Mediated Dna Nanotechnology in 3D: Structural Library By Templated Diffraction. Adv Mater 01938 2023.
ISSN: ISSN 1521-4095
PubMed: 36939292
DOI: 10.1002/ADMA.202201938