Gold in PDB 7uk0: [T:Au+:T--pH 11 W/ HGCL2] Metal-Mediated Dna Base Pair in Tensegrity Triangle

The structure of [T:Au+:T--pH 11 W/ HGCL2] Metal-Mediated Dna Base Pair in Tensegrity Triangle, PDB code: 7uk0 was solved by B.Lu, S.Vecchioni, N.C.Seeman, R.Sha, Y.P.Ohayon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	41.02 / 4.36
Space group	H 3
Cell size a, b, c (Å), α, β, γ (°)	106.855, 106.855, 88.652, 90, 90, 120
R / Rfree (%)	24.2 / 27.5

The binding sites of Gold atom in the [T:Au+:T--pH 11 W/ HGCL2] Metal-Mediated Dna Base Pair in Tensegrity Triangle (pdb code 7uk0). This binding sites where shown within 5.0 Angstroms radius around Gold atom.
In total 2 binding sites of Gold where determined in the [T:Au+:T--pH 11 W/ HGCL2] Metal-Mediated Dna Base Pair in Tensegrity Triangle, PDB code: 7uk0:
Jump to Gold binding site number: 1; 2;

Gold binding site 1 out of 2 in the [T:Au+:T--pH 11 W/ HGCL2] Metal-Mediated Dna Base Pair in Tensegrity Triangle


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 1 of [T:Au+:T--pH 11 W/ HGCL2] Metal-Mediated Dna Base Pair in Tensegrity Triangle within 5.0Å range: probe atom residue distance (Å) B Occ B:Au101 b:157.0 occ:0.62 N3 B:DT4 2.1 111.3 1.0 O4 A:DT12 2.3 72.5 1.0 N3 A:DT12 2.6 71.3 1.0 C4 A:DT12 2.8 72.2 1.0 C4 B:DT4 2.9 87.9 1.0 O4 B:DT4 3.0 81.0 1.0 C2 B:DT4 3.0 119.6 1.0 O2 B:DT4 3.2 138.8 1.0 C2 B:DA5 3.4 128.3 1.0 N1 B:DA3 3.6 36.2 1.0 N3 B:DA5 3.6 79.3 1.0 N1 B:DA5 3.6 114.8 1.0 C2 A:DT12 3.9 71.1 1.0 C4 B:DA5 3.9 78.7 1.0 C6 B:DA3 4.0 34.6 1.0 C6 B:DA5 4.0 92.6 1.0 N3 A:DT13 4.1 31.4 1.0 C2 B:DA3 4.1 36.3 1.0 N6 B:DA3 4.2 36.6 1.0 C5 B:DA5 4.2 83.6 1.0 C5 A:DT12 4.2 73.0 1.0 AU B:AU102 4.3 152.0 0.6 C5 B:DT4 4.3 76.4 1.0 N1 B:DT4 4.3 99.3 1.0 O2 A:DT12 4.3 70.6 1.0 C4 A:DT13 4.5 31.9 1.0 C2 A:DT13 4.5 30.8 1.0 O4 A:DT13 4.6 32.8 1.0 O2 A:DT13 4.7 30.7 1.0 C6 B:DT4 4.8 71.9 1.0 N9 B:DA5 4.8 97.2 1.0 N6 B:DA5 4.8 95.0 1.0 C5 B:DA3 4.9 31.6 1.0 N3 A:DT11 4.9 73.5 1.0 N3 B:DA3 4.9 35.9 1.0 N1 A:DT12 4.9 71.7 1.0 O4 A:DT11 5.0 66.9 1.0

Gold binding site 2 out of 2 in the [T:Au+:T--pH 11 W/ HGCL2] Metal-Mediated Dna Base Pair in Tensegrity Triangle


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 2 of [T:Au+:T--pH 11 W/ HGCL2] Metal-Mediated Dna Base Pair in Tensegrity Triangle within 5.0Å range: probe atom residue distance (Å) B Occ B:Au102 b:152.0 occ:0.62 O4 B:DT4 2.0 81.0 1.0 C4 B:DT4 3.2 87.9 1.0 N6 B:DA3 3.4 36.6 1.0 O4 A:DT11 3.6 66.9 1.0 O4 A:DT12 3.6 72.5 1.0 C7 B:DT4 3.8 51.7 1.0 C5 B:DT4 4.0 76.4 1.0 C6 B:DA3 4.0 34.6 1.0 N6 B:DA5 4.1 95.0 1.0 N3 B:DT4 4.2 111.3 1.0 N7 B:DA3 4.2 30.0 1.0 AU B:AU101 4.3 157.0 0.6 C4 A:DT11 4.3 79.6 1.0 C5 B:DA3 4.3 31.6 1.0 N1 B:DA5 4.5 114.8 1.0 C6 B:DA5 4.6 92.6 1.0 C4 A:DT12 4.8 72.2 1.0 C7 A:DT11 4.8 109.7 1.0 N1 B:DA3 4.9 36.2 1.0 C5 A:DT11 4.9 106.8 1.0

B.Lu, Y.P.Ohayon, R.Sha, K.Woloszyn, L.Rothschild, S.Wind, W.Hendrickson, C.Mao, N.C.Seeman, S.Vecchioni. Crystallographic pH Titration of Silver and Mercury Mediated Dna Base Pairs To Be Published.