Atomistry » Gold » PDB 7qvq-9hq6 » 7r1m
Atomistry »
  Gold »
    PDB 7qvq-9hq6 »
      7r1m »

Gold in PDB 7r1m: Crystal Structure of Exsfa, A Bacillus Cereus Spore Exosporium Protein

Protein crystallography data

The structure of Crystal Structure of Exsfa, A Bacillus Cereus Spore Exosporium Protein, PDB code: 7r1m was solved by P.Brear, S.Schack, G.Christie, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 67.39 / 1.64
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 95.298, 95.298, 117.183, 90, 90, 90
R / Rfree (%) 20.9 / 23.5

Other elements in 7r1m:

The structure of Crystal Structure of Exsfa, A Bacillus Cereus Spore Exosporium Protein also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms
Calcium (Ca) 1 atom

Gold Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 13;

Binding sites:

The binding sites of Gold atom in the Crystal Structure of Exsfa, A Bacillus Cereus Spore Exosporium Protein (pdb code 7r1m). This binding sites where shown within 5.0 Angstroms radius around Gold atom.
In total 13 binding sites of Gold where determined in the Crystal Structure of Exsfa, A Bacillus Cereus Spore Exosporium Protein, PDB code: 7r1m:
Jump to Gold binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Gold binding site 1 out of 13 in 7r1m

Go back to Gold Binding Sites List in 7r1m
Gold binding site 1 out of 13 in the Crystal Structure of Exsfa, A Bacillus Cereus Spore Exosporium Protein


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 1 of Crystal Structure of Exsfa, A Bacillus Cereus Spore Exosporium Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Au201

b:54.0
occ:1.00
O A:ARG159 2.5 32.4 1.0
O A:HOH376 2.7 32.5 1.0
O A:HOH379 2.8 48.9 1.0
C A:ARG159 3.0 30.7 1.0
C A:ALA34 3.2 32.3 1.0
OD1 A:ASN31 3.2 32.1 1.0
N A:PRO35 3.2 36.1 1.0
N A:ALA34 3.3 38.2 1.0
O A:ALA34 3.5 35.6 1.0
CA A:PRO35 3.6 35.7 1.0
CA A:ARG159 3.6 31.6 1.0
N A:SER33 3.7 44.6 1.0
N A:ALA160 3.8 28.0 1.0
CG A:ASN31 3.8 29.8 1.0
CA A:ALA34 3.9 39.5 1.0
CD A:PRO35 3.9 36.5 1.0
C A:SER33 4.0 45.6 1.0
CA A:ALA160 4.1 27.4 1.0
O A:ILE158 4.1 29.1 1.0
C A:ALA32 4.2 40.5 1.0
O A:ASN31 4.4 30.0 1.0
ND2 A:ASN31 4.4 27.4 1.0
CA A:SER33 4.4 46.4 1.0
CG A:PRO35 4.4 37.4 1.0
C A:ASN31 4.4 25.3 1.0
CA A:ALA32 4.4 31.4 1.0
CB A:ASN31 4.5 23.9 1.0
N A:ALA32 4.5 27.3 1.0
CB A:PRO35 4.5 36.0 1.0
N A:ARG159 4.6 26.5 1.0
CB A:ARG159 4.7 34.4 1.0
C A:PRO35 4.7 30.4 1.0
C A:ILE158 4.8 29.9 1.0
O A:ALA32 4.8 51.9 1.0
CB A:ALA160 4.9 29.8 1.0
O A:SER33 4.9 45.4 1.0

Gold binding site 2 out of 13 in 7r1m

Go back to Gold Binding Sites List in 7r1m
Gold binding site 2 out of 13 in the Crystal Structure of Exsfa, A Bacillus Cereus Spore Exosporium Protein


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 2 of Crystal Structure of Exsfa, A Bacillus Cereus Spore Exosporium Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Au202

b:87.4
occ:1.00
O A:HOH385 2.4 47.7 1.0
ND1 A:HIS174 3.7 139.0 1.0
ND1 A:HIS172 4.0 47.0 1.0
CE1 A:HIS172 4.0 50.8 1.0
ND1 A:HIS177 4.1 110.9 1.0
N A:HIS172 4.2 50.2 1.0
CB A:PRO171 4.2 47.3 1.0
CB A:ASN138 4.3 32.7 1.0
CG1 B:VAL57 4.3 45.7 1.0
CA A:PRO171 4.3 42.3 1.0
N A:HIS173 4.3 71.4 1.0
AU A:AU205 4.4 157.7 1.0
CD1 A:ILE77 4.4 37.0 1.0
CE1 A:HIS174 4.5 138.7 1.0
CB A:HIS173 4.6 93.8 1.0
C A:PRO171 4.7 48.0 1.0
CE1 A:HIS177 4.7 112.6 1.0
CG A:HIS174 4.8 138.5 1.0
N A:HIS174 4.9 123.5 1.0
CG A:HIS172 4.9 50.5 1.0
CG2 B:VAL57 4.9 61.1 1.0
NE2 A:HIS172 4.9 48.9 1.0
CA A:HIS173 5.0 88.5 1.0

Gold binding site 3 out of 13 in 7r1m

Go back to Gold Binding Sites List in 7r1m
Gold binding site 3 out of 13 in the Crystal Structure of Exsfa, A Bacillus Cereus Spore Exosporium Protein


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 3 of Crystal Structure of Exsfa, A Bacillus Cereus Spore Exosporium Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Au203

b:103.5
occ:1.00
OE1 A:GLN167 3.5 34.8 1.0
CD A:GLN167 3.7 32.9 1.0
NE2 A:GLN167 3.7 32.7 1.0
NH2 A:ARG74 4.0 40.3 1.0
CA A:PRO24 4.2 37.8 1.0
O A:HOH377 4.4 47.4 1.0
CG A:GLN167 4.6 32.5 1.0
CB A:PRO24 4.6 39.6 1.0
N A:PRO24 4.6 41.4 1.0
N A:ARG170 4.7 43.0 1.0
O A:LEU23 4.8 40.3 1.0
C A:SER169 4.9 43.4 1.0
NH2 A:ARG170 5.0 85.0 1.0

Gold binding site 4 out of 13 in 7r1m

Go back to Gold Binding Sites List in 7r1m
Gold binding site 4 out of 13 in the Crystal Structure of Exsfa, A Bacillus Cereus Spore Exosporium Protein


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 4 of Crystal Structure of Exsfa, A Bacillus Cereus Spore Exosporium Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Au204

b:42.2
occ:1.00
O A:HOH384 2.9 21.4 1.0
O A:VAL66 3.3 35.4 1.0
C A:VAL66 3.7 36.1 1.0
CA A:VAL66 3.9 33.8 1.0
N A:GLY67 4.4 30.1 1.0
CB A:VAL66 4.5 31.9 1.0
O A:HOH390 4.9 70.0 1.0
CA A:GLY67 4.9 30.4 1.0
O A:SER65 5.0 31.7 1.0

Gold binding site 5 out of 13 in 7r1m

Go back to Gold Binding Sites List in 7r1m
Gold binding site 5 out of 13 in the Crystal Structure of Exsfa, A Bacillus Cereus Spore Exosporium Protein


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 5 of Crystal Structure of Exsfa, A Bacillus Cereus Spore Exosporium Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Au205

b:157.7
occ:1.00
CB A:HIS173 2.7 93.8 1.0
CG2 B:VAL57 2.9 61.1 1.0
CG A:HIS173 3.1 107.2 1.0
CD2 A:HIS173 3.6 108.5 1.0
NE2 A:HIS172 3.6 48.9 1.0
ND1 A:HIS173 3.9 108.0 1.0
CE1 A:HIS172 4.0 50.8 1.0
CA A:HIS173 4.1 88.5 1.0
CD2 A:HIS172 4.1 50.4 1.0
CB B:VAL57 4.3 46.4 1.0
O B:PRO58 4.4 34.4 1.0
AU A:AU202 4.4 87.4 1.0
N A:HIS173 4.4 71.4 1.0
NE2 A:HIS173 4.5 109.5 1.0
CD B:PRO58 4.6 40.1 1.0
CG1 B:VAL57 4.6 45.7 1.0
CE1 A:HIS173 4.7 107.4 1.0
ND1 A:HIS172 4.7 47.0 1.0
CG A:HIS172 4.8 50.5 1.0
CE1 A:HIS174 4.9 138.7 1.0
ND1 A:HIS174 5.0 139.0 1.0

Gold binding site 6 out of 13 in 7r1m

Go back to Gold Binding Sites List in 7r1m
Gold binding site 6 out of 13 in the Crystal Structure of Exsfa, A Bacillus Cereus Spore Exosporium Protein


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 6 of Crystal Structure of Exsfa, A Bacillus Cereus Spore Exosporium Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Au201

b:44.5
occ:1.00
O B:HOH396 2.6 30.2 1.0
O C:HOH379 2.8 37.9 1.0
CG1 B:VAL122 3.5 36.9 1.0
O B:HOH334 3.9 48.2 1.0
CD1 B:ILE123 4.3 47.7 1.0
CB B:ILE123 4.3 36.7 1.0
CB B:VAL122 4.4 32.0 1.0
O C:HOH337 4.5 45.7 1.0
C6 B:BTB206 4.6 47.2 1.0
CG1 B:ILE123 4.6 47.1 1.0
CG1 C:VAL128 4.6 38.7 1.0
CB C:VAL128 4.6 35.5 1.0
CD1 A:ILE123 4.9 84.6 1.0
CG2 C:VAL128 5.0 36.9 1.0

Gold binding site 7 out of 13 in 7r1m

Go back to Gold Binding Sites List in 7r1m
Gold binding site 7 out of 13 in the Crystal Structure of Exsfa, A Bacillus Cereus Spore Exosporium Protein


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 7 of Crystal Structure of Exsfa, A Bacillus Cereus Spore Exosporium Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Au202

b:37.3
occ:1.00
O C:HOH383 2.6 42.5 1.0
O B:HOH398 2.7 28.4 1.0
O C:THR125 3.6 72.7 1.0
CD1 B:ILE153 3.8 34.3 1.0
NH2 B:ARG119 4.0 36.3 1.0
CA C:THR125 4.1 59.9 1.0
C C:THR125 4.2 57.3 1.0
CG B:PRO95 4.2 35.9 1.0
CD B:ARG119 4.3 34.4 1.0
O B:HOH389 4.3 24.0 1.0
CB C:THR125 4.4 57.3 1.0
CB B:ALA97 4.4 30.4 1.0
CG2 C:THR125 4.5 57.4 1.0
CB B:ARG119 4.8 28.8 1.0
CG B:ARG119 4.8 31.3 1.0
CZ B:ARG119 5.0 37.2 1.0

Gold binding site 8 out of 13 in 7r1m

Go back to Gold Binding Sites List in 7r1m
Gold binding site 8 out of 13 in the Crystal Structure of Exsfa, A Bacillus Cereus Spore Exosporium Protein


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 8 of Crystal Structure of Exsfa, A Bacillus Cereus Spore Exosporium Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Au203

b:63.3
occ:1.00
O B:ARG159 2.4 35.0 1.0
O B:HOH390 2.9 32.0 1.0
C B:ARG159 3.0 32.9 1.0
OD1 B:ASN31 3.2 36.8 1.0
C B:ALA34 3.3 39.1 1.0
N B:ALA34 3.3 41.4 1.0
N B:PRO35 3.4 35.9 1.0
O B:ALA34 3.5 43.1 1.0
N B:ALA160 3.6 29.4 1.0
CA B:ALA160 3.7 27.8 1.0
CA B:PRO35 3.7 36.0 1.0
N B:SER33 3.7 38.0 1.0
CG B:ASN31 3.8 34.7 1.0
CA B:ARG159 3.9 30.2 1.0
CA B:ALA34 3.9 42.2 1.0
O B:ASN31 4.0 30.4 1.0
C B:ALA32 4.0 39.0 1.0
CD B:PRO35 4.0 39.2 1.0
C B:SER33 4.1 48.2 1.0
C B:ASN31 4.1 28.9 1.0
CA B:ALA32 4.3 33.9 1.0
CG B:PRO35 4.3 40.2 1.0
O B:ILE158 4.3 36.6 1.0
N B:ALA32 4.4 29.4 1.0
CB B:ALA160 4.5 27.5 1.0
ND2 B:ASN31 4.5 34.1 1.0
CB B:ASN31 4.5 30.7 1.0
CA B:SER33 4.5 45.6 1.0
O B:ALA32 4.6 46.9 1.0
CB B:PRO35 4.6 36.6 1.0
N B:ARG159 4.9 27.5 1.0
C B:ALA160 4.9 28.2 1.0
C B:PRO35 4.9 34.9 1.0
CB B:ARG159 4.9 32.1 1.0
CA B:ASN31 5.0 29.8 1.0
C B:ILE158 5.0 29.8 1.0

Gold binding site 9 out of 13 in 7r1m

Go back to Gold Binding Sites List in 7r1m
Gold binding site 9 out of 13 in the Crystal Structure of Exsfa, A Bacillus Cereus Spore Exosporium Protein


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 9 of Crystal Structure of Exsfa, A Bacillus Cereus Spore Exosporium Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Au204

b:68.8
occ:1.00
O B:HOH402 2.8 47.9 1.0
O B:HOH400 3.1 66.8 1.0
CE1 B:HIS172 3.6 51.3 1.0
ND1 B:HIS172 3.6 54.3 1.0
N B:HIS173 4.0 74.5 1.0
O B:HOH391 4.2 47.6 1.0
N B:HIS172 4.2 52.2 1.0
CB B:PRO171 4.2 45.8 1.0
O B:HOH370 4.3 44.5 1.0
CG2 C:VAL57 4.3 44.0 1.0
CB B:ASN138 4.3 35.9 1.0
CA B:PRO171 4.3 45.4 1.0
C B:HIS173 4.4 81.8 1.0
CD1 B:ILE77 4.5 35.7 1.0
C B:PRO171 4.6 49.6 1.0
NE2 B:HIS172 4.6 50.5 1.0
CG B:HIS172 4.7 57.6 1.0
CA B:HIS173 4.7 78.6 1.0
CB B:HIS173 4.9 76.0 1.0
O B:HIS173 4.9 82.6 1.0

Gold binding site 10 out of 13 in 7r1m

Go back to Gold Binding Sites List in 7r1m
Gold binding site 10 out of 13 in the Crystal Structure of Exsfa, A Bacillus Cereus Spore Exosporium Protein


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 10 of Crystal Structure of Exsfa, A Bacillus Cereus Spore Exosporium Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Au205

b:126.1
occ:1.00
OE1 B:GLN167 3.7 36.2 1.0
CD B:GLN167 3.8 34.4 1.0
NE2 B:GLN167 3.8 32.6 1.0
CA B:PRO24 4.1 43.2 1.0
NH1 B:ARG74 4.1 40.8 1.0
CG B:ARG170 4.1 62.8 1.0
N B:PRO24 4.5 41.1 1.0
NH1 B:ARG170 4.5 80.5 1.0
O B:HOH394 4.5 50.1 1.0
CB B:PRO24 4.6 43.7 1.0
CG B:PRO24 4.6 48.7 1.0
CG2 B:THR22 4.6 86.8 1.0
CG B:GLN167 4.6 36.1 1.0
O B:LEU23 4.9 41.4 1.0
CD B:ARG170 4.9 72.5 1.0
O B:HOH365 4.9 64.0 1.0
C B:LEU23 4.9 43.0 1.0
N B:ARG170 4.9 36.5 1.0
CD B:PRO24 5.0 43.4 1.0

Reference:

P.Brear, S.Schack, G.Christie. Crystal Structure of Exsfa, A Bacillus Cereus Spore Exosporium Protein" To Be Published.
Page generated: Mon Jul 7 01:45:21 2025

Last articles

Ca in 5M5F
Ca in 5M3C
Ca in 5M2S
Ca in 5M62
Ca in 5M2O
Ca in 5M11
Ca in 5M0Y
Ca in 5M1P
Ca in 5M27
Ca in 5M0S
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy