Gold in PDB 7bom: Crystal Structure of Recombinant Horse Spleen Apo-R52C/E56C/R59C/E63C- Fr Immobilized with Gold Ions.

The structure of Crystal Structure of Recombinant Horse Spleen Apo-R52C/E56C/R59C/E63C- Fr Immobilized with Gold Ions., PDB code: 7bom was solved by Y.Hishikawa, B.Maity, N.Ito, S.Abe, D.Lu, T.Ueno, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.73 / 1.93
Space group	F 4 3 2
Cell size a, b, c (Å), α, β, γ (°)	181.716, 181.716, 181.716, 90, 90, 90
R / Rfree (%)	16.3 / 19.6

The structure of Crystal Structure of Recombinant Horse Spleen Apo-R52C/E56C/R59C/E63C- Fr Immobilized with Gold Ions. also contains other interesting chemical elements:

Chlorine	(Cl)	1 atom
Cadmium	(Cd)	5 atoms
Sodium	(Na)	1 atom

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Gold atom in the Crystal Structure of Recombinant Horse Spleen Apo-R52C/E56C/R59C/E63C- Fr Immobilized with Gold Ions. (pdb code 7bom). This binding sites where shown within 5.0 Angstroms radius around Gold atom.
In total 12 binding sites of Gold where determined in the Crystal Structure of Recombinant Horse Spleen Apo-R52C/E56C/R59C/E63C- Fr Immobilized with Gold Ions., PDB code: 7bom:
Jump to Gold binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Gold binding site 1 out of 12 in the Crystal Structure of Recombinant Horse Spleen Apo-R52C/E56C/R59C/E63C- Fr Immobilized with Gold Ions.


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 1 of Crystal Structure of Recombinant Horse Spleen Apo-R52C/E56C/R59C/E63C- Fr Immobilized with Gold Ions. within 5.0Å range: probe atom residue distance (Å) B Occ X:Au201 b:49.4 occ:0.30 NE2 X:HIS147 2.4 24.2 1.0 CE1 X:HIS147 2.5 19.5 1.0 CD2 X:LEU171 3.7 26.3 1.0 CD2 X:HIS147 3.8 20.9 1.0 ND1 X:HIS147 3.8 22.2 1.0 CD X:LYS143 4.3 41.4 1.0 CD1 X:PHE50 4.3 26.3 1.0 CE1 X:PHE50 4.3 27.7 1.0 CG2 X:THR170 4.3 22.4 1.0 CG X:HIS147 4.4 21.5 1.0 CG X:LYS143 4.5 35.4 1.0 O X:THR170 4.6 20.4 1.0 CE X:LYS143 5.0 51.3 1.0

Gold binding site 2 out of 12 in the Crystal Structure of Recombinant Horse Spleen Apo-R52C/E56C/R59C/E63C- Fr Immobilized with Gold Ions.


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 2 of Crystal Structure of Recombinant Horse Spleen Apo-R52C/E56C/R59C/E63C- Fr Immobilized with Gold Ions. within 5.0Å range: probe atom residue distance (Å) B Occ X:Au202 b:23.5 occ:0.45 CE X:MET96 1.8 26.3 0.5 SD X:MET96 1.8 26.3 0.5 SD X:MET96 2.1 23.1 0.5 AU X:AU203 2.3 38.1 0.2 ND1 X:HIS147 2.5 22.2 1.0 CE X:MET96 2.8 23.3 0.5 CG X:HIS147 3.2 21.5 1.0 CB X:HIS147 3.2 19.8 1.0 CG X:MET96 3.2 20.3 0.5 CG X:MET96 3.3 22.3 0.5 CE1 X:HIS147 3.5 19.5 1.0 CE2 X:PHE50 3.5 25.6 1.0 CZ X:PHE50 3.7 22.7 1.0 CD2 X:PHE50 4.1 24.1 1.0 CB X:MET96 4.1 20.8 0.5 CB X:MET96 4.1 19.6 0.5 CE1 X:PHE50 4.3 27.7 1.0 CD2 X:HIS147 4.4 20.9 1.0 NE2 X:HIS147 4.5 24.2 1.0 CD2 X:LEU171 4.6 26.3 1.0 CG X:PHE50 4.6 21.7 1.0 CE2 X:PHE166 4.7 21.8 1.0 CA X:HIS147 4.7 20.1 1.0 CD1 X:PHE50 4.7 26.3 1.0 CD1 X:ILE151 4.7 25.1 1.0 CZ X:PHE166 4.8 23.1 1.0

Gold binding site 3 out of 12 in the Crystal Structure of Recombinant Horse Spleen Apo-R52C/E56C/R59C/E63C- Fr Immobilized with Gold Ions.


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 3 of Crystal Structure of Recombinant Horse Spleen Apo-R52C/E56C/R59C/E63C- Fr Immobilized with Gold Ions. within 5.0Å range: probe atom residue distance (Å) B Occ X:Au203 b:38.1 occ:0.25 SD X:MET96 2.2 26.3 0.5 AU X:AU202 2.3 23.5 0.5 ND1 X:HIS147 2.6 22.2 1.0 CZ X:PHE50 2.7 22.7 1.0 CE X:MET96 2.8 23.3 0.5 CG X:MET144 3.1 21.3 1.0 CE2 X:PHE50 3.2 25.6 1.0 CA X:MET144 3.3 19.8 1.0 SD X:MET96 3.4 23.1 0.5 CG X:HIS147 3.4 21.5 1.0 CE1 X:HIS147 3.4 19.5 1.0 CE X:MET96 3.5 26.3 0.5 CB X:HIS147 3.6 19.8 1.0 CE1 X:PHE50 3.6 27.7 1.0 CB X:MET144 3.6 19.5 1.0 CG X:MET96 3.7 22.3 0.5 N X:MET144 3.9 19.4 1.0 O X:LYS143 4.2 18.7 1.0 C X:LYS143 4.3 20.4 1.0 CD2 X:PHE50 4.3 24.1 1.0 C X:MET144 4.3 18.2 1.0 O X:MET144 4.4 20.5 1.0 NE2 X:HIS147 4.5 24.2 1.0 CD2 X:HIS147 4.5 20.9 1.0 CE X:MET144 4.6 25.7 1.0 SD X:MET144 4.6 26.8 1.0 CD1 X:PHE50 4.6 26.3 1.0 CG X:MET96 4.7 20.3 0.5 CG X:LYS143 4.9 35.4 1.0 CG X:PHE50 4.9 21.7 1.0 CB X:MET96 5.0 20.8 0.5

Gold binding site 4 out of 12 in the Crystal Structure of Recombinant Horse Spleen Apo-R52C/E56C/R59C/E63C- Fr Immobilized with Gold Ions.


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 4 of Crystal Structure of Recombinant Horse Spleen Apo-R52C/E56C/R59C/E63C- Fr Immobilized with Gold Ions. within 5.0Å range: probe atom residue distance (Å) B Occ X:Au204 b:33.8 occ:0.50 SG X:CYS48 2.2 28.2 1.0 ND1 X:HIS49 2.4 49.1 1.0 CB X:CYS48 2.9 23.1 1.0 N X:HIS49 3.1 19.4 1.0 CE1 X:HIS49 3.1 53.0 1.0 C X:CYS48 3.2 20.9 1.0 AU X:AU205 3.4 26.5 0.7 CA X:HIS49 3.5 23.6 1.0 CG X:HIS49 3.5 44.4 1.0 O X:GLU45 3.5 18.0 1.0 CA X:CYS48 3.6 22.6 1.0 O X:CYS48 3.8 21.7 1.0 O X:HOH312 4.0 44.2 1.0 CB X:HIS49 4.0 30.6 1.0 O X:HOH318 4.1 40.9 1.0 NE2 X:HIS49 4.3 59.5 1.0 CG X:GLU45 4.5 37.2 1.0 CD2 X:HIS49 4.5 49.8 1.0 C X:GLU45 4.6 19.3 1.0 N X:CYS48 4.6 19.1 1.0 CA X:GLU45 4.9 20.7 1.0 C X:HIS49 4.9 23.5 1.0

Gold binding site 5 out of 12 in the Crystal Structure of Recombinant Horse Spleen Apo-R52C/E56C/R59C/E63C- Fr Immobilized with Gold Ions.


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 5 of Crystal Structure of Recombinant Horse Spleen Apo-R52C/E56C/R59C/E63C- Fr Immobilized with Gold Ions. within 5.0Å range: probe atom residue distance (Å) B Occ X:Au205 b:26.5 occ:0.65 SG X:CYS48 2.2 28.2 1.0 SG X:CYS52 2.3 27.3 0.7 O X:CYS48 2.9 21.7 1.0 AU X:AU206 3.1 44.1 0.6 CB X:CYS52 3.2 22.7 0.7 C X:CYS48 3.4 20.9 1.0 AU X:AU204 3.4 33.8 0.5 CB X:CYS52 3.4 24.4 0.3 CB X:CYS48 3.4 23.1 1.0 CA X:CYS48 3.6 22.6 1.0 O X:GLY34 3.6 20.5 1.0 C X:GLY34 3.6 20.3 1.0 CA X:GLY34 3.6 19.6 1.0 CA X:CYS52 4.3 22.8 0.3 N X:CYS52 4.3 19.6 1.0 N X:HIS49 4.3 19.4 1.0 CA X:CYS52 4.3 22.4 0.7 N X:PHE35 4.3 18.7 1.0 SG X:CYS52 4.4 30.2 0.3 CA X:HIS49 4.8 23.6 1.0 N X:GLY34 5.0 18.6 1.0

Gold binding site 6 out of 12 in the Crystal Structure of Recombinant Horse Spleen Apo-R52C/E56C/R59C/E63C- Fr Immobilized with Gold Ions.


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 6 of Crystal Structure of Recombinant Horse Spleen Apo-R52C/E56C/R59C/E63C- Fr Immobilized with Gold Ions. within 5.0Å range: probe atom residue distance (Å) B Occ X:Au206 b:44.1 occ:0.55 SG X:CYS52 2.3 27.3 0.7 SG X:CYS52 2.9 30.2 0.3 CB X:CYS52 3.1 22.7 0.7 AU X:AU205 3.1 26.5 0.7 CB X:CYS52 3.4 24.4 0.3 CE2 X:PHE35 3.8 22.4 1.0 CZ X:PHE35 3.8 23.2 1.0 O X:HOH423 3.9 47.6 1.0 CA X:CYS52 4.4 22.8 0.3 CA X:CYS52 4.5 22.4 0.7 CD2 X:PHE35 4.6 22.2 1.0 CE1 X:PHE35 4.7 20.4 1.0 SG X:CYS48 4.8 28.2 1.0

Gold binding site 7 out of 12 in the Crystal Structure of Recombinant Horse Spleen Apo-R52C/E56C/R59C/E63C- Fr Immobilized with Gold Ions.


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 7 of Crystal Structure of Recombinant Horse Spleen Apo-R52C/E56C/R59C/E63C- Fr Immobilized with Gold Ions. within 5.0Å range: probe atom residue distance (Å) B Occ X:Au207 b:30.0 occ:0.60 ND1 X:HIS114 2.1 35.2 1.0 SG X:CYS126 2.2 38.0 1.0 CG X:HIS114 3.0 31.8 1.0 CE1 X:HIS114 3.1 38.0 1.0 O X:HIS114 3.1 27.6 1.0 CB X:CYS126 3.2 34.2 1.0 CB X:HIS114 3.3 29.8 1.0 CA X:HIS114 3.4 27.6 1.0 AU X:AU208 3.6 39.0 0.6 C X:HIS114 3.6 27.3 1.0 CA X:CYS126 3.9 31.6 1.0 N X:SER118 4.1 32.7 1.0 CD2 X:HIS114 4.1 34.8 1.0 NE2 X:HIS114 4.2 34.0 1.0 CB X:SER118 4.2 38.9 1.0 CA X:SER118 4.6 35.8 1.0 C X:GLY117 4.8 29.4 1.0 N X:CYS126 4.8 27.9 1.0 N X:ALA115 4.8 26.7 1.0 N X:HIS114 4.9 25.3 1.0

Gold binding site 8 out of 12 in the Crystal Structure of Recombinant Horse Spleen Apo-R52C/E56C/R59C/E63C- Fr Immobilized with Gold Ions.


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 8 of Crystal Structure of Recombinant Horse Spleen Apo-R52C/E56C/R59C/E63C- Fr Immobilized with Gold Ions. within 5.0Å range: probe atom residue distance (Å) B Occ X:Au208 b:39.0 occ:0.60 SG X:CYS126 2.4 38.0 1.0 CB X:CYS126 3.2 34.2 1.0 O X:ASP122 3.5 26.9 1.0 AU X:AU207 3.6 30.0 0.6 CA X:SER118 3.7 35.8 1.0 N X:SER118 3.7 32.7 1.0 O X:GLY117 3.8 34.0 1.0 C X:ASP122 3.8 27.8 1.0 C X:GLY117 3.8 29.4 1.0 CA X:PRO123 4.0 27.9 1.0 N X:PRO123 4.1 29.2 1.0 N X:ASP122 4.2 28.5 1.0 CB X:SER118 4.3 38.9 1.0 CA X:CYS126 4.5 31.6 1.0 CA X:ASP122 4.6 27.4 1.0 N X:CYS126 4.7 27.9 1.0 CA X:GLY117 4.8 27.3 1.0 C X:SER118 4.9 33.4 1.0 CB X:PRO123 4.9 30.0 1.0 OG X:SER118 4.9 42.4 1.0 C X:PRO123 5.0 28.5 1.0 O X:SER118 5.0 31.7 1.0

Gold binding site 9 out of 12 in the Crystal Structure of Recombinant Horse Spleen Apo-R52C/E56C/R59C/E63C- Fr Immobilized with Gold Ions.


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 9 of Crystal Structure of Recombinant Horse Spleen Apo-R52C/E56C/R59C/E63C- Fr Immobilized with Gold Ions. within 5.0Å range: probe atom residue distance (Å) B Occ X:Au209 b:54.1 occ:0.60 SG X:CYS63 2.1 20.7 0.5 CB X:CYS63 3.0 18.7 0.5 AU X:AU210 3.1 30.3 0.7 CB X:CYS63 3.3 23.1 0.5 SG X:CYS63 3.5 30.9 0.5 AU X:AU212 4.1 53.2 0.4 CA X:CYS63 4.4 21.6 0.5 CA X:CYS63 4.4 19.6 0.5

Gold binding site 10 out of 12 in the Crystal Structure of Recombinant Horse Spleen Apo-R52C/E56C/R59C/E63C- Fr Immobilized with Gold Ions.


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 10 of Crystal Structure of Recombinant Horse Spleen Apo-R52C/E56C/R59C/E63C- Fr Immobilized with Gold Ions. within 5.0Å range: probe atom residue distance (Å) B Occ X:Au210 b:30.3 occ:0.65 SG X:CYS63 2.2 20.7 0.5 SG X:CYS59 2.4 39.2 1.0 O X:CYS59 2.6 20.2 1.0 AU X:AU212 3.0 53.2 0.4 AU X:AU209 3.1 54.1 0.6 C X:CYS59 3.2 24.4 1.0 CB X:CYS63 3.4 18.7 0.5 CB X:CYS59 3.5 25.8 1.0 AU X:AU211 3.6 56.8 0.6 CB X:CYS63 3.6 23.1 0.5 CA X:CYS59 3.6 24.7 1.0 N X:CYS63 3.9 19.9 1.0 N X:GLU60 4.1 22.6 1.0 CA X:CYS63 4.2 21.6 0.5 CA X:CYS63 4.2 19.6 0.5 CB X:ALA62 4.6 20.8 1.0 CA X:GLU60 4.6 26.2 1.0 CD2 X:LEU24 4.8 23.3 1.0 C X:ALA62 4.9 21.6 1.0

Y.Hishikawa, B.Maity, N.Ito, S.Abe, D.Lu, T.Ueno. Design of Multinuclear Gold Binding Site at the Two-Fold Symmetric Interface of the Ferritin Cage Chem Lett. V. 49 840 2021.
ISSN: ESSN 1348-0715
DOI: 10.1246/CL.200217