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Gold in PDB 6sew: X-Ray Structure of the Gold/Lysozyme Adduct Formed Upon 24H Exposure of Protein Crystals to Compound 2

Enzymatic activity of X-Ray Structure of the Gold/Lysozyme Adduct Formed Upon 24H Exposure of Protein Crystals to Compound 2

All present enzymatic activity of X-Ray Structure of the Gold/Lysozyme Adduct Formed Upon 24H Exposure of Protein Crystals to Compound 2:
3.2.1.17;

Protein crystallography data

The structure of X-Ray Structure of the Gold/Lysozyme Adduct Formed Upon 24H Exposure of Protein Crystals to Compound 2, PDB code: 6sew was solved by G.Ferraro, A.Giorgio, A.Merlino, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.99 / 2.12
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.328, 78.328, 37.691, 90.00, 90.00, 90.00
R / Rfree (%) 21.1 / 29.5

Gold Binding Sites:

The binding sites of Gold atom in the X-Ray Structure of the Gold/Lysozyme Adduct Formed Upon 24H Exposure of Protein Crystals to Compound 2 (pdb code 6sew). This binding sites where shown within 5.0 Angstroms radius around Gold atom.
In total only one binding site of Gold was determined in the X-Ray Structure of the Gold/Lysozyme Adduct Formed Upon 24H Exposure of Protein Crystals to Compound 2, PDB code: 6sew:

Gold binding site 1 out of 1 in 6sew

Go back to Gold Binding Sites List in 6sew
Gold binding site 1 out of 1 in the X-Ray Structure of the Gold/Lysozyme Adduct Formed Upon 24H Exposure of Protein Crystals to Compound 2


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 1 of X-Ray Structure of the Gold/Lysozyme Adduct Formed Upon 24H Exposure of Protein Crystals to Compound 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Au209

b:42.6
occ:0.50
 ND1 A:HIS15 2.3 28.5 1.0
O A:HOH323 2.4 8.4 0.5
OD1 A:ASN93 2.8 21.6 0.5
CG A:HIS15 3.2 28.7 1.0
CE1 A:HIS15 3.3 30.4 1.0
CB A:HIS15 3.3 28.6 1.0
CG1 A:VAL92 3.4 21.4 1.0
CG A:ASN93 3.6 24.6 0.5
O A:HIS15 3.7 26.7 1.0
O A:THR89 3.8 24.3 1.0
CB A:VAL92 3.8 21.7 1.0
CA A:HIS15 3.8 28.8 1.0
CA A:THR89 3.9 23.7 1.0
ND2 A:ASN93 3.9 25.5 0.5
CG2 A:THR89 4.0 23.1 1.0
O A:HOH348 4.1 43.7 1.0
C A:HIS15 4.3 28.2 1.0
CD2 A:HIS15 4.3 29.4 1.0
C A:THR89 4.4 24.5 1.0
CB A:THR89 4.4 24.0 1.0
NZ A:LYS96 4.4 24.4 1.0
NE2 A:HIS15 4.4 31.4 1.0
OG1 A:THR89 4.4 24.2 1.0
N A:ASN93 4.7 23.2 0.5
N A:ASN93 4.7 22.8 0.5
CG2 A:VAL92 4.7 21.4 1.0
CB A:ASN93 4.9 23.9 0.5

Reference:

G.Ferraro, A.Giorgio, A.M.Mansour, A.Merlino. Protein-Mediated Disproportionation of Au(I): Insights From the Structures of Adducts of Au(III) Compounds Bearing N,N-Pyridylbenzimidazole Derivatives with Lysozyme. Dalton Trans V. 48 14027 2019.
ISSN: ESSN 1477-9234
PubMed: 31490509
DOI: 10.1039/C9DT02729G
Page generated: Sat Dec 12 01:54:46 2020

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