Atomistry » Gold » PDB 5jjo-7pvj » 6sew
Atomistry »
  Gold »
    PDB 5jjo-7pvj »
      6sew »

Gold in PDB 6sew: X-Ray Structure of the Gold/Lysozyme Adduct Formed Upon 24H Exposure of Protein Crystals to Compound 2

Enzymatic activity of X-Ray Structure of the Gold/Lysozyme Adduct Formed Upon 24H Exposure of Protein Crystals to Compound 2

All present enzymatic activity of X-Ray Structure of the Gold/Lysozyme Adduct Formed Upon 24H Exposure of Protein Crystals to Compound 2:
3.2.1.17;

Protein crystallography data

The structure of X-Ray Structure of the Gold/Lysozyme Adduct Formed Upon 24H Exposure of Protein Crystals to Compound 2, PDB code: 6sew was solved by G.Ferraro, A.Giorgio, A.Merlino, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.99 / 2.12
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.328, 78.328, 37.691, 90.00, 90.00, 90.00
R / Rfree (%) 21.1 / 29.5

Gold Binding Sites:

The binding sites of Gold atom in the X-Ray Structure of the Gold/Lysozyme Adduct Formed Upon 24H Exposure of Protein Crystals to Compound 2 (pdb code 6sew). This binding sites where shown within 5.0 Angstroms radius around Gold atom.
In total only one binding site of Gold was determined in the X-Ray Structure of the Gold/Lysozyme Adduct Formed Upon 24H Exposure of Protein Crystals to Compound 2, PDB code: 6sew:

Gold binding site 1 out of 1 in 6sew

Go back to Gold Binding Sites List in 6sew
Gold binding site 1 out of 1 in the X-Ray Structure of the Gold/Lysozyme Adduct Formed Upon 24H Exposure of Protein Crystals to Compound 2


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 1 of X-Ray Structure of the Gold/Lysozyme Adduct Formed Upon 24H Exposure of Protein Crystals to Compound 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Au209

b:42.6
occ:0.50
 ND1 A:HIS15 2.3 28.5 1.0
O A:HOH323 2.4 8.4 0.5
OD1 A:ASN93 2.8 21.6 0.5
CG A:HIS15 3.2 28.7 1.0
CE1 A:HIS15 3.3 30.4 1.0
CB A:HIS15 3.3 28.6 1.0
CG1 A:VAL92 3.4 21.4 1.0
CG A:ASN93 3.6 24.6 0.5
O A:HIS15 3.7 26.7 1.0
O A:THR89 3.8 24.3 1.0
CB A:VAL92 3.8 21.7 1.0
CA A:HIS15 3.8 28.8 1.0
CA A:THR89 3.9 23.7 1.0
ND2 A:ASN93 3.9 25.5 0.5
CG2 A:THR89 4.0 23.1 1.0
O A:HOH348 4.1 43.7 1.0
C A:HIS15 4.3 28.2 1.0
CD2 A:HIS15 4.3 29.4 1.0
C A:THR89 4.4 24.5 1.0
CB A:THR89 4.4 24.0 1.0
NZ A:LYS96 4.4 24.4 1.0
NE2 A:HIS15 4.4 31.4 1.0
OG1 A:THR89 4.4 24.2 1.0
N A:ASN93 4.7 23.2 0.5
N A:ASN93 4.7 22.8 0.5
CG2 A:VAL92 4.7 21.4 1.0
CB A:ASN93 4.9 23.9 0.5

Reference:

G.Ferraro, A.Giorgio, A.M.Mansour, A.Merlino. Protein-Mediated Disproportionation of Au(I): Insights From the Structures of Adducts of Au(III) Compounds Bearing N,N-Pyridylbenzimidazole Derivatives with Lysozyme. Dalton Trans V. 48 14027 2019.
ISSN: ESSN 1477-9234
PubMed: 31490509
DOI: 10.1039/C9DT02729G
Page generated: Wed Jul 10 14:39:35 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy