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Gold in PDB 6ctd: C-Terminal Domain Truncation of the Mycobacterium Tuberculosis Mechanosensitive Channel of Large Conductance Mscl

Protein crystallography data

The structure of C-Terminal Domain Truncation of the Mycobacterium Tuberculosis Mechanosensitive Channel of Large Conductance Mscl, PDB code: 6ctd was solved by N.Herrera, D.C.Rees, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 22.83 / 5.80
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 84.709, 110.313, 136.804, 90.00, 91.20, 90.00
R / Rfree (%) 37.1 / 38.7

Gold Binding Sites:

The binding sites of Gold atom in the C-Terminal Domain Truncation of the Mycobacterium Tuberculosis Mechanosensitive Channel of Large Conductance Mscl (pdb code 6ctd). This binding sites where shown within 5.0 Angstroms radius around Gold atom.
In total 5 binding sites of Gold where determined in the C-Terminal Domain Truncation of the Mycobacterium Tuberculosis Mechanosensitive Channel of Large Conductance Mscl, PDB code: 6ctd:
Jump to Gold binding site number: 1; 2; 3; 4; 5;

Gold binding site 1 out of 5 in 6ctd

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Gold binding site 1 out of 5 in the C-Terminal Domain Truncation of the Mycobacterium Tuberculosis Mechanosensitive Channel of Large Conductance Mscl


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 1 of C-Terminal Domain Truncation of the Mycobacterium Tuberculosis Mechanosensitive Channel of Large Conductance Mscl within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Au201

b:0.8
occ:1.01
O F:GLY63 1.3 0.8 1.0
C F:GLY63 1.6 0.1 1.0
CA F:GLY63 1.7 0.3 1.0
N F:GLY64 2.9 0.9 1.0
N F:GLY63 3.1 0.6 1.0
O F:GLY62 3.4 0.3 1.0
C F:GLY62 3.6 0.6 1.0
CA F:GLY64 3.9 0.7 1.0

Gold binding site 2 out of 5 in 6ctd

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Gold binding site 2 out of 5 in the C-Terminal Domain Truncation of the Mycobacterium Tuberculosis Mechanosensitive Channel of Large Conductance Mscl


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 2 of C-Terminal Domain Truncation of the Mycobacterium Tuberculosis Mechanosensitive Channel of Large Conductance Mscl within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Au201

b:0.3
occ:1.01
O G:GLY63 1.8 0.4 1.0
CA G:GLY63 2.0 1.0 1.0
C G:GLY63 2.0 0.7 1.0
N G:GLY64 3.3 0.0 1.0
N G:GLY63 3.3 0.2 1.0
O G:GLY62 3.8 0.2 1.0
C G:GLY62 4.0 0.4 1.0
CA G:GLY64 4.3 0.8 1.0
O D:ILE59 4.9 0.1 1.0
OG C:SER52 5.0 0.6 1.0

Gold binding site 3 out of 5 in 6ctd

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Gold binding site 3 out of 5 in the C-Terminal Domain Truncation of the Mycobacterium Tuberculosis Mechanosensitive Channel of Large Conductance Mscl


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 3 of C-Terminal Domain Truncation of the Mycobacterium Tuberculosis Mechanosensitive Channel of Large Conductance Mscl within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Au201

b:0.5
occ:0.87
O H:GLY63 1.6 0.4 1.0
C H:GLY63 2.6 0.8 1.0
O B:GLY63 2.9 0.4 1.0
CA H:GLY64 3.0 0.9 1.0
N H:GLY64 3.1 0.1 1.0
C B:GLY63 3.6 0.8 1.0
CA H:GLY63 3.8 0.0 1.0
CA B:GLY64 4.1 0.6 1.0
N B:GLY64 4.2 0.8 1.0
CA B:GLY63 4.4 0.0 1.0
C H:GLY64 4.4 0.4 1.0
N H:GLY63 5.0 0.2 1.0
O H:GLY62 5.0 0.8 1.0

Gold binding site 4 out of 5 in 6ctd

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Gold binding site 4 out of 5 in the C-Terminal Domain Truncation of the Mycobacterium Tuberculosis Mechanosensitive Channel of Large Conductance Mscl


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 4 of C-Terminal Domain Truncation of the Mycobacterium Tuberculosis Mechanosensitive Channel of Large Conductance Mscl within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Au201

b:1.0
occ:0.85
O I:GLY63 1.8 0.6 1.0
C I:GLY63 2.4 0.9 1.0
CA I:GLY63 2.5 0.1 1.0
O I:GLY62 3.2 0.8 1.0
N I:GLY63 3.6 0.4 1.0
N I:GLY64 3.6 0.4 1.0
C I:GLY62 3.8 0.1 1.0
CA I:GLY64 4.4 0.2 1.0
OG A:SER52 4.6 0.2 1.0
CG2 I:VAL54 4.7 0.8 1.0
O I:ASP53 4.7 0.1 1.0
CB I:VAL54 4.8 0.5 1.0

Gold binding site 5 out of 5 in 6ctd

Go back to Gold Binding Sites List in 6ctd
Gold binding site 5 out of 5 in the C-Terminal Domain Truncation of the Mycobacterium Tuberculosis Mechanosensitive Channel of Large Conductance Mscl


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 5 of C-Terminal Domain Truncation of the Mycobacterium Tuberculosis Mechanosensitive Channel of Large Conductance Mscl within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Au201

b:0.1
occ:0.53
C J:GLY63 1.6 0.9 1.0
CA J:GLY63 1.8 0.1 1.0
O J:GLY63 2.0 0.5 1.0
N J:GLY64 2.4 0.8 1.0
N J:GLY63 3.1 0.3 1.0
CA J:GLY64 3.3 0.6 1.0
O E:GLY63 4.2 0.0 1.0
C J:GLY62 4.3 0.3 1.0
O J:GLY62 4.6 0.0 1.0
OG E:SER52 4.6 0.4 1.0
C J:GLY64 4.7 0.1 1.0

Reference:

N.Herrera, G.Maksaev, E.S.Haswell, D.C.Rees. Elucidating A Role For the Cytoplasmic Domain in the Mycobacterium Tuberculosis Mechanosensitive Channel of Large Conductance. Sci Rep V. 8 14566 2018.
ISSN: ESSN 2045-2322
PubMed: 30275500
DOI: 10.1038/S41598-018-32536-6
Page generated: Sat Dec 12 01:54:29 2020

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