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Gold in PDB 5w1l: Echinococcus Granulosus Thioredoxin Glutathione Reductas (Egtgr) with Gold

Protein crystallography data

The structure of Echinococcus Granulosus Thioredoxin Glutathione Reductas (Egtgr) with Gold, PDB code: 5w1l was solved by W.Gao, Y.Wang, S.Dai, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 100.72 / 2.88
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 109.346, 109.346, 258.713, 90.00, 90.00, 90.00
R / Rfree (%) 18.5 / 24.9

Gold Binding Sites:

The binding sites of Gold atom in the Echinococcus Granulosus Thioredoxin Glutathione Reductas (Egtgr) with Gold (pdb code 5w1l). This binding sites where shown within 5.0 Angstroms radius around Gold atom.
In total 2 binding sites of Gold where determined in the Echinococcus Granulosus Thioredoxin Glutathione Reductas (Egtgr) with Gold, PDB code: 5w1l:
Jump to Gold binding site number: 1; 2;

Gold binding site 1 out of 2 in 5w1l

Go back to Gold Binding Sites List in 5w1l
Gold binding site 1 out of 2 in the Echinococcus Granulosus Thioredoxin Glutathione Reductas (Egtgr) with Gold


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 1 of Echinococcus Granulosus Thioredoxin Glutathione Reductas (Egtgr) with Gold within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Au602

b:0.3
occ:1.00
CE2 A:PHE504 3.1 60.0 1.0
CB A:CYS573 3.3 61.5 1.0
CD A:PRO506 3.3 68.5 1.0
SG A:CYS573 3.4 70.6 1.0
CB A:CYS519 3.5 63.8 1.0
CD A:PRO541 3.5 53.1 1.0
CG A:PRO506 3.6 69.0 1.0
SG A:CYS519 3.7 63.2 1.0
CB A:PRO506 3.8 69.8 1.0
CD2 A:PHE504 3.9 61.5 1.0
N A:PRO506 4.0 71.8 1.0
CZ A:PHE504 4.0 59.4 1.0
CA A:PRO506 4.2 70.5 1.0
CA A:CYS573 4.3 58.4 1.0
CG A:PRO541 4.3 54.0 1.0
CA A:GLY540 4.7 55.8 1.0
N A:PRO541 4.7 52.6 1.0
C A:GLN505 4.8 74.9 1.0
CA A:CYS519 5.0 65.0 1.0

Gold binding site 2 out of 2 in 5w1l

Go back to Gold Binding Sites List in 5w1l
Gold binding site 2 out of 2 in the Echinococcus Granulosus Thioredoxin Glutathione Reductas (Egtgr) with Gold


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 2 of Echinococcus Granulosus Thioredoxin Glutathione Reductas (Egtgr) with Gold within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Au602

b:0.4
occ:1.00
CE2 B:PHE504 3.3 63.6 1.0
CD B:PRO506 3.4 68.2 1.0
CB B:CYS573 3.4 66.6 1.0
CG B:PRO506 3.4 68.9 1.0
CB B:CYS519 3.5 60.0 1.0
SG B:CYS573 3.5 78.6 1.0
CD B:PRO541 3.6 58.4 1.0
SG B:CYS519 3.7 60.6 1.0
CB B:PRO506 3.8 68.0 1.0
CZ B:PHE504 3.9 63.0 1.0
N B:PRO506 4.0 67.0 1.0
CD2 B:PHE504 4.0 64.4 1.0
CA B:PRO506 4.2 67.0 1.0
CA B:CYS573 4.3 63.7 1.0
CG B:PRO541 4.3 58.8 1.0
CA B:GLY540 4.8 61.3 1.0
N B:PRO541 4.9 59.0 1.0
C B:GLN505 4.9 70.2 1.0
CA B:CYS519 5.0 62.8 1.0

Reference:

G.Salinas, W.Gao, Y.Wang, M.Bonilla, L.Yu, A.Novikov, V.G.Virginio, H.B.Ferreira, M.Vieites, V.N.Gladyshev, D.Gambino, S.Dai. The Enzymatic and Structural Basis For Inhibition of Echinococcus Granulosus Thioredoxin Glutathione Reductase By Gold(I). Antioxid. Redox Signal. V. 27 1491 2017.
ISSN: ESSN 1557-7716
PubMed: 28463568
DOI: 10.1089/ARS.2016.6816
Page generated: Sat Dec 12 01:54:25 2020

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