Atomistry » Gold » PDB 1a52-3k3g » 3k1l
Atomistry »
  Gold »
    PDB 1a52-3k3g »
      3k1l »

Gold in PDB 3k1l: Crystal Structure of Fancl

Enzymatic activity of Crystal Structure of Fancl

All present enzymatic activity of Crystal Structure of Fancl:
6.3.2.19;

Protein crystallography data

The structure of Crystal Structure of Fancl, PDB code: 3k1l was solved by A.R.Cole, H.Walden, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 77.93 / 3.20
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 188.680, 188.680, 259.360, 90.00, 90.00, 120.00
R / Rfree (%) 20.5 / 24.7

Other elements in 3k1l:

The structure of Crystal Structure of Fancl also contains other interesting chemical elements:

Zinc (Zn) 4 atoms

Gold Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 13;

Binding sites:

The binding sites of Gold atom in the Crystal Structure of Fancl (pdb code 3k1l). This binding sites where shown within 5.0 Angstroms radius around Gold atom.
In total 13 binding sites of Gold where determined in the Crystal Structure of Fancl, PDB code: 3k1l:
Jump to Gold binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Gold binding site 1 out of 13 in 3k1l

Go back to Gold Binding Sites List in 3k1l
Gold binding site 1 out of 13 in the Crystal Structure of Fancl


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 1 of Crystal Structure of Fancl within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Au384

b:79.0
occ:0.23
CB B:CYS125 3.0 77.5 1.0
SG B:CYS125 3.4 78.4 1.0
NE2 B:GLN127 3.6 0.0 1.0
CG B:GLN127 4.4 0.9 1.0
CA B:CYS125 4.4 82.2 1.0
CD B:GLN127 4.5 0.0 1.0
OG B:SER138 4.5 68.1 1.0
CG B:GLU139 4.6 0.5 1.0
C B:CYS125 4.9 77.9 1.0

Gold binding site 2 out of 13 in 3k1l

Go back to Gold Binding Sites List in 3k1l
Gold binding site 2 out of 13 in the Crystal Structure of Fancl


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 2 of Crystal Structure of Fancl within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Au385

b:79.0
occ:0.60
SG B:CYS165 2.3 62.3 1.0
O7 B:CIT2502 2.8 0.3 0.8
O B:CYS165 3.1 62.0 1.0
C B:CYS165 3.1 62.1 1.0
CB B:CYS165 3.2 60.2 1.0
N B:VAL166 3.4 72.8 1.0
CA B:CYS165 3.7 60.9 1.0
CA B:VAL166 3.8 76.4 1.0
CD B:PRO239 3.8 69.6 1.0
CG2 B:VAL166 3.8 61.3 1.0
C3 B:CIT2502 4.2 0.3 0.8
CG B:PRO239 4.2 68.3 1.0
O6 B:CIT2502 4.5 0.3 0.8
CB B:VAL166 4.5 59.7 1.0
N B:CYS165 4.5 63.5 1.0
C1 B:CIT2502 4.7 0.3 0.8
O B:ALA237 4.7 69.0 1.0
C6 B:CIT2502 4.7 0.3 0.8
O2 B:CIT2502 4.8 0.3 0.8
O1 B:CIT2502 4.8 0.3 0.8
NZ B:LYS220 4.9 73.8 1.0
C4 B:CIT2502 5.0 0.3 0.8

Gold binding site 3 out of 13 in 3k1l

Go back to Gold Binding Sites List in 3k1l
Gold binding site 3 out of 13 in the Crystal Structure of Fancl


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 3 of Crystal Structure of Fancl within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Au386

b:79.0
occ:0.15
CB B:CYS288 3.0 93.4 1.0
SG B:CYS288 3.3 94.5 1.0
CA B:CYS288 4.5 0.3 1.0
N B:CYS288 4.8 0.9 1.0

Gold binding site 4 out of 13 in 3k1l

Go back to Gold Binding Sites List in 3k1l
Gold binding site 4 out of 13 in the Crystal Structure of Fancl


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 4 of Crystal Structure of Fancl within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Au387

b:79.0
occ:0.11
CA B:CYS12 2.9 0.8 1.0
O B:CYS12 2.9 0.1 1.0
SG B:CYS12 3.0 0.7 1.0
CB B:CYS12 3.1 1.0 1.0
C B:CYS12 3.3 0.2 1.0
N A:TRP346 4.1 76.0 1.0
CA B:PRO16 4.1 0.5 1.0
N B:CYS12 4.2 0.1 1.0
O B:HOH397 4.3 79.0 1.0
CB B:PRO16 4.3 97.2 1.0
CB A:TRP346 4.3 88.3 1.0
CA A:TRP346 4.4 83.7 1.0
CB A:GLU345 4.4 0.3 1.0
O B:LEU11 4.5 1.0 1.0
N B:GLN13 4.6 0.8 1.0
C B:LEU11 4.8 0.7 1.0
CD1 A:TRP346 4.9 69.4 1.0
N B:PRO16 4.9 95.2 1.0
C A:GLU345 4.9 0.4 1.0
CG B:PRO16 4.9 90.8 1.0
O B:PRO16 5.0 0.1 1.0

Gold binding site 5 out of 13 in 3k1l

Go back to Gold Binding Sites List in 3k1l
Gold binding site 5 out of 13 in the Crystal Structure of Fancl


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 5 of Crystal Structure of Fancl within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Au388

b:79.0
occ:0.13
SG B:CYS28 2.5 0.4 1.0
CD1 B:LEU22 3.0 97.2 1.0
CB B:CYS28 3.5 89.2 1.0
N B:LEU22 3.8 0.6 1.0
CA B:LEU22 3.9 0.4 1.0
CB B:LEU22 3.9 0.6 1.0
CG1 B:VAL7 3.9 0.3 1.0
ND1 B:HIS50 3.9 0.9 1.0
CB B:ALA20 4.0 0.0 1.0
CE1 B:HIS50 4.0 1.0 1.0
CG B:LEU22 4.1 0.2 1.0
C B:GLU21 4.1 0.3 1.0
O B:ALA20 4.2 0.9 1.0
C B:ALA20 4.2 0.6 1.0
CA B:CYS28 4.4 0.0 1.0
O B:GLU21 4.4 0.4 1.0
N B:GLU21 4.5 0.2 1.0
CA B:ALA20 4.6 0.5 1.0
CA B:GLU21 4.8 0.9 1.0
CB B:VAL7 4.9 0.8 1.0

Gold binding site 6 out of 13 in 3k1l

Go back to Gold Binding Sites List in 3k1l
Gold binding site 6 out of 13 in the Crystal Structure of Fancl


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 6 of Crystal Structure of Fancl within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Au389

b:79.0
occ:0.25
CE1 B:TYR119 3.2 0.9 1.0
CD1 B:TYR119 3.3 93.9 1.0
CZ B:TYR119 3.4 0.1 1.0
CG B:TYR119 3.5 88.5 1.0
CE2 B:TYR119 3.5 0.6 1.0
CD2 B:TYR119 3.6 93.5 1.0
OH B:TYR119 4.1 0.9 1.0
CD2 B:LEU116 4.2 62.1 1.0
CB B:TYR119 4.3 78.0 1.0

Gold binding site 7 out of 13 in 3k1l

Go back to Gold Binding Sites List in 3k1l
Gold binding site 7 out of 13 in the Crystal Structure of Fancl


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 7 of Crystal Structure of Fancl within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Au390

b:79.0
occ:0.14
SG B:CYS242 2.6 77.8 1.0
ND2 B:ASN199 2.7 99.3 1.0
CG1 B:ILE243 3.0 83.4 1.0
CD1 B:ILE277 3.2 76.4 1.0
CB B:CYS242 3.3 79.6 1.0
CG1 B:ILE277 3.4 80.5 1.0
C B:CYS242 3.5 98.5 1.0
CG B:ASN199 3.5 98.7 1.0
O B:CYS242 3.6 93.9 1.0
N B:ILE243 3.6 92.8 1.0
CA B:ILE243 3.9 98.6 1.0
CA B:CYS242 3.9 93.8 1.0
CD1 B:ILE243 4.0 0.5 1.0
CB B:ILE243 4.0 86.6 1.0
OD1 B:ASN199 4.1 0.1 1.0
CB B:ASN199 4.3 88.9 1.0
CD1 B:ILE236 4.7 70.2 1.0
CB B:ILE277 4.8 84.3 1.0

Gold binding site 8 out of 13 in 3k1l

Go back to Gold Binding Sites List in 3k1l
Gold binding site 8 out of 13 in the Crystal Structure of Fancl


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 8 of Crystal Structure of Fancl within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Au391

b:79.0
occ:0.20
N A:CYS12 3.2 94.1 1.0
OG1 B:THR349 3.3 0.8 1.0
CA A:CYS12 3.6 0.2 1.0
O A:GLU8 3.6 87.5 1.0
C A:LEU11 3.7 0.6 1.0
CB A:LEU11 3.7 77.3 1.0
CB A:CYS12 3.9 0.6 1.0
O A:LEU11 4.2 0.3 1.0
CA A:LEU11 4.3 85.8 1.0
CB B:THR349 4.3 0.2 1.0
O B:THR349 4.4 0.2 1.0
C A:GLU8 4.5 81.8 1.0
O A:LEU18 4.6 69.9 1.0
CA B:THR349 4.7 0.2 1.0
CA A:GLU8 4.7 76.1 1.0
SG A:CYS12 4.9 0.3 1.0
N A:LEU11 5.0 87.4 1.0
CG A:LEU11 5.0 77.3 1.0

Gold binding site 9 out of 13 in 3k1l

Go back to Gold Binding Sites List in 3k1l
Gold binding site 9 out of 13 in the Crystal Structure of Fancl


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 9 of Crystal Structure of Fancl within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Au384

b:79.0
occ:0.23
CB A:CYS125 2.7 0.5 1.0
SG A:CYS125 3.2 0.2 1.0
NE2 A:GLN127 3.6 0.2 1.0
CA A:CYS125 4.1 77.0 1.0
CG A:GLN127 4.2 0.3 1.0
CD A:GLN127 4.4 0.7 1.0
C A:CYS125 4.5 73.2 1.0
OG A:SER138 4.5 72.2 1.0
O A:HOH391 4.8 79.0 1.0
O A:CYS125 4.8 73.4 1.0
CG A:GLU139 4.9 85.2 1.0

Gold binding site 10 out of 13 in 3k1l

Go back to Gold Binding Sites List in 3k1l
Gold binding site 10 out of 13 in the Crystal Structure of Fancl


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 10 of Crystal Structure of Fancl within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Au385

b:79.0
occ:0.68
SG A:CYS165 2.4 56.8 1.0
O7 A:CIT2504 3.0 0.3 0.8
C A:CYS165 3.3 60.5 1.0
O A:CYS165 3.4 61.1 1.0
CB A:CYS165 3.4 59.5 1.0
N A:VAL166 3.5 72.9 1.0
CD A:PRO239 3.6 59.6 1.0
CG2 A:VAL166 3.7 62.5 1.0
CA A:VAL166 3.8 76.5 1.0
CA A:CYS165 4.0 59.5 1.0
CG A:PRO239 4.1 58.1 1.0
O2 A:CIT2504 4.1 0.3 0.8
CB A:VAL166 4.3 60.5 1.0
C3 A:CIT2504 4.4 0.3 0.8
C1 A:CIT2504 4.6 0.3 0.8
N A:CYS165 4.7 60.8 1.0
O A:ALA237 4.7 58.5 1.0
C4 A:CIT2504 4.7 0.3 0.8

Reference:

A.R.Cole, L.P.C.Lewis, H.Walden. The Structure of the Catalytic Subunit Fancl of the Fanconi Anemia Core Complex Nat.Struct.Mol.Biol. V. 17 294 2010.
ISSN: ISSN 1545-9993
PubMed: 20154706
DOI: 10.1038/NSMB.1759
Page generated: Sat Dec 12 01:53:36 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy