Atomistry » Gold » PDB 1a52-3k3g » 3es3
Atomistry »
  Gold »
    PDB 1a52-3k3g »
      3es3 »

Gold in PDB 3es3: Directing Noble Metal Ion Chemistry Within A Designed Ferritin Protein. the Complex with Gold Ions. Ferritin H8-H9X Mutant

Enzymatic activity of Directing Noble Metal Ion Chemistry Within A Designed Ferritin Protein. the Complex with Gold Ions. Ferritin H8-H9X Mutant

All present enzymatic activity of Directing Noble Metal Ion Chemistry Within A Designed Ferritin Protein. the Complex with Gold Ions. Ferritin H8-H9X Mutant:
1.16.3.1;

Protein crystallography data

The structure of Directing Noble Metal Ion Chemistry Within A Designed Ferritin Protein. the Complex with Gold Ions. Ferritin H8-H9X Mutant, PDB code: 3es3 was solved by L.Di Costanzo, D.W.Christianson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.94 / 2.80
Space group F 4 3 2
Cell size a, b, c (Å), α, β, γ (°) 181.564, 181.564, 181.564, 90.00, 90.00, 90.00
R / Rfree (%) 22.2 / 27.5

Other elements in 3es3:

The structure of Directing Noble Metal Ion Chemistry Within A Designed Ferritin Protein. the Complex with Gold Ions. Ferritin H8-H9X Mutant also contains other interesting chemical elements:

Calcium (Ca) 2 atoms

Gold Binding Sites:

The binding sites of Gold atom in the Directing Noble Metal Ion Chemistry Within A Designed Ferritin Protein. the Complex with Gold Ions. Ferritin H8-H9X Mutant (pdb code 3es3). This binding sites where shown within 5.0 Angstroms radius around Gold atom.
In total 4 binding sites of Gold where determined in the Directing Noble Metal Ion Chemistry Within A Designed Ferritin Protein. the Complex with Gold Ions. Ferritin H8-H9X Mutant, PDB code: 3es3:
Jump to Gold binding site number: 1; 2; 3; 4;

Gold binding site 1 out of 4 in 3es3

Go back to Gold Binding Sites List in 3es3
Gold binding site 1 out of 4 in the Directing Noble Metal Ion Chemistry Within A Designed Ferritin Protein. the Complex with Gold Ions. Ferritin H8-H9X Mutant


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 1 of Directing Noble Metal Ion Chemistry Within A Designed Ferritin Protein. the Complex with Gold Ions. Ferritin H8-H9X Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Au731

b:58.0
occ:1.00
 ND1 A:HIS57 2.5 38.0 1.0
ND1 A:HIS60 2.7 36.5 1.0
O A:HOH786 2.8 40.5 1.0
O A:HOH737 2.9 30.9 1.0
CE1 A:HIS57 3.4 37.6 1.0
CG A:HIS57 3.5 33.9 1.0
CB A:HIS60 3.5 31.1 1.0
CG A:HIS60 3.5 34.8 1.0
CA A:HIS57 3.7 27.7 1.0
CB A:HIS57 3.7 30.1 1.0
CE1 A:HIS60 3.8 35.9 1.0
O A:HIS57 4.2 28.4 1.0
C A:HIS57 4.4 27.9 1.0
NE2 A:HIS57 4.5 36.1 1.0
CD2 A:HIS57 4.5 33.3 1.0
N A:HIS57 4.7 25.8 1.0
O A:LEU56 4.7 26.4 1.0
CD2 A:HIS60 4.8 35.3 1.0
NE2 A:HIS60 4.9 37.1 1.0
CA A:HIS60 4.9 29.1 1.0

Gold binding site 2 out of 4 in 3es3

Go back to Gold Binding Sites List in 3es3
Gold binding site 2 out of 4 in the Directing Noble Metal Ion Chemistry Within A Designed Ferritin Protein. the Complex with Gold Ions. Ferritin H8-H9X Mutant


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 2 of Directing Noble Metal Ion Chemistry Within A Designed Ferritin Protein. the Complex with Gold Ions. Ferritin H8-H9X Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Au732

b:56.5
occ:0.37
 NE2 A:HIS65 2.9 36.0 1.0
SG A:CYS140 2.9 43.8 1.0
CB A:CYS140 3.0 37.6 1.0
O A:HIS136 3.5 34.1 1.0
CE1 A:HIS65 3.8 35.4 1.0
O A:HOH780 3.8 35.1 1.0
CD2 A:HIS65 3.9 33.8 1.0
C A:HIS136 4.2 33.0 1.0
CA A:CYS140 4.5 33.9 1.0
O A:HOH746 4.5 38.5 1.0
CA A:HIS136 4.7 34.0 1.0
N A:TYR137 4.9 34.3 1.0
ND1 A:HIS65 5.0 32.1 1.0
N A:CYS140 5.0 34.3 1.0

Gold binding site 3 out of 4 in 3es3

Go back to Gold Binding Sites List in 3es3
Gold binding site 3 out of 4 in the Directing Noble Metal Ion Chemistry Within A Designed Ferritin Protein. the Complex with Gold Ions. Ferritin H8-H9X Mutant


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 3 of Directing Noble Metal Ion Chemistry Within A Designed Ferritin Protein. the Complex with Gold Ions. Ferritin H8-H9X Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Au733

b:34.7
occ:0.19
 ND1 A:HIS118 2.6 31.8 1.0
CE1 A:HIS118 3.4 32.1 1.0
CG A:HIS118 3.5 32.0 1.0
N A:LYS119 3.5 29.7 1.0
CA A:LYS119 3.6 29.4 1.0
C A:HIS118 3.7 30.5 1.0
CB A:HIS118 3.8 29.9 1.0
O A:HIS118 3.9 31.4 1.0
CB A:LYS119 4.2 29.6 1.0
CA A:HIS118 4.4 29.3 1.0
NE2 A:HIS118 4.4 32.0 1.0
OG1 A:THR122 4.5 30.9 1.0
CD2 A:HIS118 4.5 32.6 1.0
O A:LEU115 4.7 28.0 1.0
CG A:LYS119 4.8 31.7 1.0
CB A:THR122 4.8 30.9 1.0
C A:LYS119 4.9 29.6 1.0

Gold binding site 4 out of 4 in 3es3

Go back to Gold Binding Sites List in 3es3
Gold binding site 4 out of 4 in the Directing Noble Metal Ion Chemistry Within A Designed Ferritin Protein. the Complex with Gold Ions. Ferritin H8-H9X Mutant


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 4 of Directing Noble Metal Ion Chemistry Within A Designed Ferritin Protein. the Complex with Gold Ions. Ferritin H8-H9X Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Au734

b:46.5
occ:0.67
 NE2 A:HIS173 2.6 30.1 1.0
CE1 A:HIS173 3.1 30.4 1.0
CD2 A:HIS173 3.7 28.1 1.0
CD2 A:LEU169 4.1 25.2 1.0
ND1 A:HIS173 4.3 29.5 1.0
CG A:HIS173 4.7 27.3 1.0

Reference:

C.A.Butts, J.Swift, S.G.Kang, L.Di Costanzo, D.W.Christianson, J.G.Saven, I.J.Dmochowski. Directing Noble Metal Ion Chemistry Within A Designed Ferritin Protein. Biochemistry V. 47 12729 2008.
ISSN: ISSN 0006-2960
PubMed: 18991401
DOI: 10.1021/BI8016735
Page generated: Wed Jul 10 14:14:25 2024

Last articles

Zn in 9J0N
Zn in 9J0O
Zn in 9J0P
Zn in 9FJX
Zn in 9EKB
Zn in 9C0F
Zn in 9CAH
Zn in 9CH0
Zn in 9CH3
Zn in 9CH1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy