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Gold in PDB 3es3: Directing Noble Metal Ion Chemistry Within A Designed Ferritin Protein. the Complex with Gold Ions. Ferritin H8-H9X Mutant

Enzymatic activity of Directing Noble Metal Ion Chemistry Within A Designed Ferritin Protein. the Complex with Gold Ions. Ferritin H8-H9X Mutant

All present enzymatic activity of Directing Noble Metal Ion Chemistry Within A Designed Ferritin Protein. the Complex with Gold Ions. Ferritin H8-H9X Mutant:
1.16.3.1;

Protein crystallography data

The structure of Directing Noble Metal Ion Chemistry Within A Designed Ferritin Protein. the Complex with Gold Ions. Ferritin H8-H9X Mutant, PDB code: 3es3 was solved by L.Di Costanzo, D.W.Christianson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.94 / 2.80
Space group F 4 3 2
Cell size a, b, c (Å), α, β, γ (°) 181.564, 181.564, 181.564, 90.00, 90.00, 90.00
R / Rfree (%) 22.2 / 27.5

Other elements in 3es3:

The structure of Directing Noble Metal Ion Chemistry Within A Designed Ferritin Protein. the Complex with Gold Ions. Ferritin H8-H9X Mutant also contains other interesting chemical elements:

Calcium (Ca) 2 atoms

Gold Binding Sites:

The binding sites of Gold atom in the Directing Noble Metal Ion Chemistry Within A Designed Ferritin Protein. the Complex with Gold Ions. Ferritin H8-H9X Mutant (pdb code 3es3). This binding sites where shown within 5.0 Angstroms radius around Gold atom.
In total 4 binding sites of Gold where determined in the Directing Noble Metal Ion Chemistry Within A Designed Ferritin Protein. the Complex with Gold Ions. Ferritin H8-H9X Mutant, PDB code: 3es3:
Jump to Gold binding site number: 1; 2; 3; 4;

Gold binding site 1 out of 4 in 3es3

Go back to Gold Binding Sites List in 3es3
Gold binding site 1 out of 4 in the Directing Noble Metal Ion Chemistry Within A Designed Ferritin Protein. the Complex with Gold Ions. Ferritin H8-H9X Mutant


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 1 of Directing Noble Metal Ion Chemistry Within A Designed Ferritin Protein. the Complex with Gold Ions. Ferritin H8-H9X Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Au731

b:58.0
occ:1.00
 ND1 A:HIS57 2.5 38.0 1.0
ND1 A:HIS60 2.7 36.5 1.0
O A:HOH786 2.8 40.5 1.0
O A:HOH737 2.9 30.9 1.0
CE1 A:HIS57 3.4 37.6 1.0
CG A:HIS57 3.5 33.9 1.0
CB A:HIS60 3.5 31.1 1.0
CG A:HIS60 3.5 34.8 1.0
CA A:HIS57 3.7 27.7 1.0
CB A:HIS57 3.7 30.1 1.0
CE1 A:HIS60 3.8 35.9 1.0
O A:HIS57 4.2 28.4 1.0
C A:HIS57 4.4 27.9 1.0
NE2 A:HIS57 4.5 36.1 1.0
CD2 A:HIS57 4.5 33.3 1.0
N A:HIS57 4.7 25.8 1.0
O A:LEU56 4.7 26.4 1.0
CD2 A:HIS60 4.8 35.3 1.0
NE2 A:HIS60 4.9 37.1 1.0
CA A:HIS60 4.9 29.1 1.0

Gold binding site 2 out of 4 in 3es3

Go back to Gold Binding Sites List in 3es3
Gold binding site 2 out of 4 in the Directing Noble Metal Ion Chemistry Within A Designed Ferritin Protein. the Complex with Gold Ions. Ferritin H8-H9X Mutant


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 2 of Directing Noble Metal Ion Chemistry Within A Designed Ferritin Protein. the Complex with Gold Ions. Ferritin H8-H9X Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Au732

b:56.5
occ:0.37
 NE2 A:HIS65 2.9 36.0 1.0
SG A:CYS140 2.9 43.8 1.0
CB A:CYS140 3.0 37.6 1.0
O A:HIS136 3.5 34.1 1.0
CE1 A:HIS65 3.8 35.4 1.0
O A:HOH780 3.8 35.1 1.0
CD2 A:HIS65 3.9 33.8 1.0
C A:HIS136 4.2 33.0 1.0
CA A:CYS140 4.5 33.9 1.0
O A:HOH746 4.5 38.5 1.0
CA A:HIS136 4.7 34.0 1.0
N A:TYR137 4.9 34.3 1.0
ND1 A:HIS65 5.0 32.1 1.0
N A:CYS140 5.0 34.3 1.0

Gold binding site 3 out of 4 in 3es3

Go back to Gold Binding Sites List in 3es3
Gold binding site 3 out of 4 in the Directing Noble Metal Ion Chemistry Within A Designed Ferritin Protein. the Complex with Gold Ions. Ferritin H8-H9X Mutant


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 3 of Directing Noble Metal Ion Chemistry Within A Designed Ferritin Protein. the Complex with Gold Ions. Ferritin H8-H9X Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Au733

b:34.7
occ:0.19
 ND1 A:HIS118 2.6 31.8 1.0
CE1 A:HIS118 3.4 32.1 1.0
CG A:HIS118 3.5 32.0 1.0
N A:LYS119 3.5 29.7 1.0
CA A:LYS119 3.6 29.4 1.0
C A:HIS118 3.7 30.5 1.0
CB A:HIS118 3.8 29.9 1.0
O A:HIS118 3.9 31.4 1.0
CB A:LYS119 4.2 29.6 1.0
CA A:HIS118 4.4 29.3 1.0
NE2 A:HIS118 4.4 32.0 1.0
OG1 A:THR122 4.5 30.9 1.0
CD2 A:HIS118 4.5 32.6 1.0
O A:LEU115 4.7 28.0 1.0
CG A:LYS119 4.8 31.7 1.0
CB A:THR122 4.8 30.9 1.0
C A:LYS119 4.9 29.6 1.0

Gold binding site 4 out of 4 in 3es3

Go back to Gold Binding Sites List in 3es3
Gold binding site 4 out of 4 in the Directing Noble Metal Ion Chemistry Within A Designed Ferritin Protein. the Complex with Gold Ions. Ferritin H8-H9X Mutant


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 4 of Directing Noble Metal Ion Chemistry Within A Designed Ferritin Protein. the Complex with Gold Ions. Ferritin H8-H9X Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Au734

b:46.5
occ:0.67
 NE2 A:HIS173 2.6 30.1 1.0
CE1 A:HIS173 3.1 30.4 1.0
CD2 A:HIS173 3.7 28.1 1.0
CD2 A:LEU169 4.1 25.2 1.0
ND1 A:HIS173 4.3 29.5 1.0
CG A:HIS173 4.7 27.3 1.0

Reference:

C.A.Butts, J.Swift, S.G.Kang, L.Di Costanzo, D.W.Christianson, J.G.Saven, I.J.Dmochowski. Directing Noble Metal Ion Chemistry Within A Designed Ferritin Protein. Biochemistry V. 47 12729 2008.
ISSN: ISSN 0006-2960
PubMed: 18991401
DOI: 10.1021/BI8016735
Page generated: Wed Jul 10 14:14:25 2024

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