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Gold in PDB 2z7j: Structural Insights Into De Multifunctional VP3 Protein of Birnaviruses:Gold Derivative

Protein crystallography data

The structure of Structural Insights Into De Multifunctional VP3 Protein of Birnaviruses:Gold Derivative, PDB code: 2z7j was solved by A.Casanas, A.Navarro, C.Ferrer-Orta, D.Gonzalez, J.F.Rodriguez, N.Verdaguer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.40
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 69.749, 69.749, 71.656, 90.00, 90.00, 90.00
R / Rfree (%) 23.6 / 28.5

Gold Binding Sites:

The binding sites of Gold atom in the Structural Insights Into De Multifunctional VP3 Protein of Birnaviruses:Gold Derivative (pdb code 2z7j). This binding sites where shown within 5.0 Angstroms radius around Gold atom.
In total 3 binding sites of Gold where determined in the Structural Insights Into De Multifunctional VP3 Protein of Birnaviruses:Gold Derivative, PDB code: 2z7j:
Jump to Gold binding site number: 1; 2; 3;

Gold binding site 1 out of 3 in 2z7j

Go back to Gold Binding Sites List in 2z7j
Gold binding site 1 out of 3 in the Structural Insights Into De Multifunctional VP3 Protein of Birnaviruses:Gold Derivative


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 1 of Structural Insights Into De Multifunctional VP3 Protein of Birnaviruses:Gold Derivative within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Au1

b:70.0
occ:1.00
NE2 A:HIS155 2.5 78.5 1.0
CD2 A:HIS155 3.2 78.4 1.0
OE2 A:GLU157 3.5 85.9 1.0
CE1 A:HIS155 3.6 78.5 1.0
CG A:LYS135 3.7 59.6 1.0
CE A:LYS135 3.9 64.1 1.0
CD A:LYS135 4.4 62.1 1.0
CG A:HIS155 4.5 79.2 1.0
CD A:GLU157 4.5 86.0 1.0
ND1 A:HIS155 4.6 78.8 1.0
CB A:LYS135 4.7 58.5 1.0

Gold binding site 2 out of 3 in 2z7j

Go back to Gold Binding Sites List in 2z7j
Gold binding site 2 out of 3 in the Structural Insights Into De Multifunctional VP3 Protein of Birnaviruses:Gold Derivative


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 2 of Structural Insights Into De Multifunctional VP3 Protein of Birnaviruses:Gold Derivative within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Au2

b:78.3
occ:1.00
NE2 A:HIS220 3.3 72.3 1.0
CD2 A:HIS220 3.6 72.9 1.0
CE1 A:HIS220 3.9 72.1 1.0
CG A:HIS220 4.3 74.0 1.0
ND1 A:HIS220 4.4 73.9 1.0

Gold binding site 3 out of 3 in 2z7j

Go back to Gold Binding Sites List in 2z7j
Gold binding site 3 out of 3 in the Structural Insights Into De Multifunctional VP3 Protein of Birnaviruses:Gold Derivative


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 3 of Structural Insights Into De Multifunctional VP3 Protein of Birnaviruses:Gold Derivative within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Au3

b:0.4
occ:0.50
ND1 A:HIS199 2.4 71.4 1.0
CE1 A:HIS199 3.1 71.3 1.0
CG A:HIS199 3.2 70.4 1.0
CB A:HIS199 3.7 67.8 1.0
NE2 A:HIS199 4.0 71.8 1.0
CD2 A:HIS199 4.1 72.4 1.0
CA A:HIS199 4.7 67.5 1.0
O A:HOH228 4.7 60.1 1.0
O A:ILE197 4.9 60.6 1.0
N A:HIS199 4.9 66.0 1.0

Reference:

A.Casanas, A.Navarro, C.Ferrer-Orta, D.Gonzalez, J.F.Rodriguez, N.Verdaguer. Structural Insights Into the Multifunctional Protein VP3 of Birnaviruses. Structure V. 16 29 2008.
ISSN: ISSN 0969-2126
PubMed: 18184581
DOI: 10.1016/J.STR.2007.10.023
Page generated: Sat Dec 12 01:53:25 2020

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