Gold in the structure of Crystal Structure Of the N-Terminal Domain of E.Coli Ybgf (pdb 2wz7)

The binding sites of Gold atom in the structure of Crystal Structure Of the N-Terminal Domain of E.Coli Ybgf (pdb code 2wz7). This binding sites where shown with 5.0 Angstroms radius around Gold atom. The 2wz7 structure was solved by A.M.KRACHLER, A.SHARMA, C.KLEANTHOUS, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 39.6-2.5 Space group P212121 a (A) 39.737 b (A) 41.382 c (A) 237.697 alpha (°) 90.00 beta (°) 90.00 gamma (°) 90.00 Rfactor (%) 21.257 Rfree (%) 30.223 Gold Binding Sites: Gold binding site 1 out of 3 in 2wz7 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Gold in the PDB 2wz7. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Gold atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: C: Gln57, D: Val53, D: Arg56, D: Gln57, D: Ile60, E: Val53, E: Gln57, D: Auc1069, conact list: Atom Atom Distance (A) Au NE2 C:Gln57 3.96 Au CD C:Gln57 4.76 Au CG C:Gln57 4.96 Au O D:Val53 4.07 Au C D:Val53 4.92 Au CG1 D:Val53 4.13 Au CA D:Val53 4.99 Au CB D:Arg56 4.65 Au CB D:Arg56 4.83 Au C D:Arg56 4.62 Au CG D:Arg56 4.89 Au N D:Gln57 4.10 Au CB D:Gln57 3.98 Au CA D:Gln57 4.10 Au CD1 D:Ile60 4.25 Au O E:Val53 4.42 Au CG1 E:Val53 4.31 Au N E:Gln57 4.93 Au OE1 E:Gln57 4.89 Au CB E:Gln57 3.10 Au CD E:Gln57 4.72 Au CG E:Gln57 3.71 Au CA E:Gln57 4.37 Au N1 D:Auc1069 2.85 Au AU D:Auc1069 0.00 Au N2 D:Auc1069 3.00 Au C2 D:Auc1069 1.84 Au C1 D:Auc1069 1.70 interactive model: Gold binding site 2 out of 3 in 2wz7 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Gold in the PDB 2wz7. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Gold atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: B: Gln57, F: Gln49, F: Gln52, F: Val53, F: Arg56, F: Hoh2015, conact list: Atom Atom Distance (A) Au NE2 B:Gln57 2.72 Au OE1 B:Gln57 3.60 Au CD B:Gln57 3.50 Au CG B:Gln57 4.82 Au NE2 F:Gln49 4.41 Au O F:Gln52 3.06 Au OE1 F:Gln52 4.90 Au CB F:Gln52 3.55 Au C F:Gln52 3.23 Au CG F:Gln52 4.89 Au CA F:Gln52 3.98 Au N F:Val53 3.52 Au CB F:Val53 4.70 Au CG2 F:Val53 4.38 Au C F:Val53 4.87 Au CA F:Val53 3.75 Au CB F:Arg56 3.92 Au CD F:Arg56 3.28 Au CZ F:Arg56 3.94 Au CG F:Arg56 4.28 Au NE F:Arg56 4.00 Au NH1 F:Arg56 3.08 Au O F:Hoh2015 3.03 interactive model: Gold binding site 3 out of 3 in 2wz7 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Gold in the PDB 2wz7. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Gold atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Leu29, A: Asn32, B: Leu29, B: Asn32, F: Gln28, F: Leu29, F: Asn32, conact list: Atom Atom Distance (A) Au CG A:Leu29 4.88 Au CB A:Asn32 3.83 Au ND2 A:Asn32 3.04 Au CG A:Asn32 3.90 Au O B:Leu29 4.92 Au CD1 B:Leu29 3.41 Au CG B:Leu29 4.76 Au CB B:Asn32 4.01 Au ND2 B:Asn32 2.60 Au OD1 B:Asn32 4.84 Au CG B:Asn32 3.72 Au O F:Gln28 4.90 Au O F:Leu29 4.75 Au CD2 F:Leu29 3.63 Au CG F:Leu29 4.72 Au CA F:Leu29 4.49 Au CB F:Asn32 3.24 Au ND2 F:Asn32 2.49 Au OD1 F:Asn32 4.51 Au CG F:Asn32 3.30 Au CA F:Asn32 4.73 interactive model: