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Gold in PDB 2pqr: Crystal Structure of Yeast FIS1 Complexed with A Fragment of Yeast CAF4

Protein crystallography data

The structure of Crystal Structure of Yeast FIS1 Complexed with A Fragment of Yeast CAF4, PDB code: 2pqr was solved by Y.Zhang, D.C.Chan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.40 / 1.88
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 60.408, 46.948, 64.468, 90.00, 99.21, 90.00
R / Rfree (%) 20.8 / 24.1

Gold Binding Sites:

The binding sites of Gold atom in the Crystal Structure of Yeast FIS1 Complexed with A Fragment of Yeast CAF4 (pdb code 2pqr). This binding sites where shown within 5.0 Angstroms radius around Gold atom.
In total 3 binding sites of Gold where determined in the Crystal Structure of Yeast FIS1 Complexed with A Fragment of Yeast CAF4, PDB code: 2pqr:
Jump to Gold binding site number: 1; 2; 3;

Gold binding site 1 out of 3 in 2pqr

Go back to Gold Binding Sites List in 2pqr
Gold binding site 1 out of 3 in the Crystal Structure of Yeast FIS1 Complexed with A Fragment of Yeast CAF4


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 1 of Crystal Structure of Yeast FIS1 Complexed with A Fragment of Yeast CAF4 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Au301

b:41.8
occ:0.50
AU B:AU301 0.0 41.8 0.5
O B:HOH303 2.6 31.7 1.0
O B:HOH312 2.6 38.3 1.0
AU B:AU301 2.8 44.9 0.2
CG1 B:VAL29 3.7 21.3 1.0
C B:GLY34 4.0 24.9 1.0
N B:PRO35 4.2 27.1 1.0
CA B:GLY34 4.2 24.8 1.0
O B:GLY34 4.3 23.6 1.0
CD B:PRO35 4.7 27.1 1.0
CA B:PRO35 4.7 27.2 1.0
CD1 B:ILE64 4.8 23.2 1.0
CE2 B:TYR45 4.9 24.1 1.0

Gold binding site 2 out of 3 in 2pqr

Go back to Gold Binding Sites List in 2pqr
Gold binding site 2 out of 3 in the Crystal Structure of Yeast FIS1 Complexed with A Fragment of Yeast CAF4


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 2 of Crystal Structure of Yeast FIS1 Complexed with A Fragment of Yeast CAF4 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Au301

b:44.9
occ:0.18
AU B:AU301 0.0 44.9 0.2
AU B:AU301 2.8 41.8 0.5
O B:HOH303 3.5 31.7 1.0
CD1 B:LEU60 3.8 23.7 1.0
CD1 B:ILE64 4.2 23.2 1.0
CD2 B:LEU60 4.3 20.6 1.0
O B:HOH312 4.5 38.3 1.0
CG1 B:ILE64 4.5 20.6 1.0
CG B:LEU60 4.5 21.7 1.0

Gold binding site 3 out of 3 in 2pqr

Go back to Gold Binding Sites List in 2pqr
Gold binding site 3 out of 3 in the Crystal Structure of Yeast FIS1 Complexed with A Fragment of Yeast CAF4


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 3 of Crystal Structure of Yeast FIS1 Complexed with A Fragment of Yeast CAF4 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Au302

b:50.3
occ:0.25
O B:HOH382 2.5 40.7 1.0
CZ D:PHE127 3.7 31.6 1.0
CE2 D:PHE130 3.9 26.0 1.0
O B:HOH338 3.9 38.8 1.0
CE1 D:PHE127 4.1 29.7 1.0
NZ B:LYS51 4.2 18.6 1.0
CD2 D:PHE130 4.4 25.4 1.0
CE B:LYS51 4.6 16.5 1.0
CE2 D:PHE127 4.9 31.5 1.0
CG B:ASP12 4.9 37.5 1.0
OD2 B:ASP12 4.9 39.9 1.0

Reference:

Y.Zhang, D.C.Chan. Structural Basis For Recruitment of Mitochondrial Fission Complexes By FIS1. Proc.Natl.Acad.Sci.Usa V. 104 18526 2007.
ISSN: ISSN 0027-8424
PubMed: 17998537
DOI: 10.1073/PNAS.0706441104
Page generated: Sat Dec 12 01:53:15 2020

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