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Gold in PDB 2b8j: Crystal Structure of Apha Class B Acid Phosphatase/Phosphotransferase Ternary Complex with Adenosine and Phosphate at 2 A Resolution

Enzymatic activity of Crystal Structure of Apha Class B Acid Phosphatase/Phosphotransferase Ternary Complex with Adenosine and Phosphate at 2 A Resolution

All present enzymatic activity of Crystal Structure of Apha Class B Acid Phosphatase/Phosphotransferase Ternary Complex with Adenosine and Phosphate at 2 A Resolution:
3.1.3.2;

Protein crystallography data

The structure of Crystal Structure of Apha Class B Acid Phosphatase/Phosphotransferase Ternary Complex with Adenosine and Phosphate at 2 A Resolution, PDB code: 2b8j was solved by V.Calderone, C.Forleo, M.Benvenuti, M.C.Thaller, G.M.Rossolini, S.Mangani, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.39 / 2.03
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 89.966, 66.544, 91.544, 90.00, 124.02, 90.00
R / Rfree (%) 17.1 / 22.3

Other elements in 2b8j:

The structure of Crystal Structure of Apha Class B Acid Phosphatase/Phosphotransferase Ternary Complex with Adenosine and Phosphate at 2 A Resolution also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Gold Binding Sites:

The binding sites of Gold atom in the Crystal Structure of Apha Class B Acid Phosphatase/Phosphotransferase Ternary Complex with Adenosine and Phosphate at 2 A Resolution (pdb code 2b8j). This binding sites where shown within 5.0 Angstroms radius around Gold atom.
In total 2 binding sites of Gold where determined in the Crystal Structure of Apha Class B Acid Phosphatase/Phosphotransferase Ternary Complex with Adenosine and Phosphate at 2 A Resolution, PDB code: 2b8j:
Jump to Gold binding site number: 1; 2;

Gold binding site 1 out of 2 in 2b8j

Go back to Gold Binding Sites List in 2b8j
Gold binding site 1 out of 2 in the Crystal Structure of Apha Class B Acid Phosphatase/Phosphotransferase Ternary Complex with Adenosine and Phosphate at 2 A Resolution


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 1 of Crystal Structure of Apha Class B Acid Phosphatase/Phosphotransferase Ternary Complex with Adenosine and Phosphate at 2 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Au320

b:42.8
occ:0.50
N5 A:SPM653 2.5 10.0 0.5
N1 A:SPM653 2.9 14.6 0.5
C3 A:SPM653 3.0 9.9 0.5
C4 A:SPM653 3.1 6.0 0.5
C7 A:SPM653 3.3 9.8 0.5
C2 A:SPM653 3.4 11.4 0.5
C6 A:SPM653 3.4 7.9 0.5
CE2 A:TYR193 3.8 25.2 1.0
CZ A:TYR193 4.0 24.3 1.0
OH A:TYR193 4.2 26.8 1.0
O1 A:PO4301 4.2 30.4 1.0
CD2 A:TYR193 4.3 22.5 1.0
C8 A:SPM653 4.4 10.4 0.5
CE1 A:TYR193 4.5 24.4 1.0
CD2 A:LEU71 4.8 17.5 1.0
CD1 A:LEU71 4.8 22.4 1.0
CG A:TYR193 4.8 20.0 1.0
CD1 A:TYR193 4.9 20.6 1.0

Gold binding site 2 out of 2 in 2b8j

Go back to Gold Binding Sites List in 2b8j
Gold binding site 2 out of 2 in the Crystal Structure of Apha Class B Acid Phosphatase/Phosphotransferase Ternary Complex with Adenosine and Phosphate at 2 A Resolution


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 2 of Crystal Structure of Apha Class B Acid Phosphatase/Phosphotransferase Ternary Complex with Adenosine and Phosphate at 2 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Au321

b:22.4
occ:0.10
CE1 A:HIS22 4.7 26.0 1.0
O B:HOH405 4.8 30.3 1.0

Reference:

V.Calderone, C.Forleo, M.Benvenuti, M.C.Thaller, G.M.Rossolini, S.Mangani. A Structure-Based Proposal For the Catalytic Mechanism of the Bacterial Acid Phosphatase Apha Belonging to the Dddd Superfamily of Phosphohydrolases J.Mol.Biol. V. 355 708 2006.
ISSN: ISSN 0022-2836
PubMed: 16330049
DOI: 10.1016/J.JMB.2005.10.068
Page generated: Sat Dec 12 01:53:12 2020

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