Gold in the structure of Structure Of The Conserved Domain Of Anac, A Member Of the Nac Family of Transcription Factors (pdb 1ut7)

The binding sites of Gold atom in the structure of Structure Of The Conserved Domain Of Anac, A Member Of the Nac Family of Transcription Factors (pdb code 1ut7). This binding sites where shown with 5.0 Angstroms radius around Gold atom. The 1ut7 structure was solved by H.A.ERNST, A.N.OLSEN, K.SKRIVER, S.LARSEN, L.LO LEGGIO, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 30.0-1.9 Space group P212121 a (A) 62.365 b (A) 75.302 c (A) 80.515 alpha (°) 90.00 beta (°) 90.00 gamma (°) 90.00 Rfactor (%) 21.2 Rfree (%) 24.4 Gold Binding Sites: Gold binding site 1 out of 4 in 1ut7 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Gold in the PDB 1ut7. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Gold atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Phe41, A: Leu43, A: Gln44, A: Leu45, A: Ile46, A: Phe73, A: Hoh2023, A: Hoh2028, conact list: Atom Atom Distance (A) Au CB A:Phe41 4.08 Au CE2 A:Phe41 3.87 Au CD1 A:Phe41 3.42 Au CD2 A:Phe41 3.64 Au CZ A:Phe41 3.86 Au CE1 A:Phe41 3.65 Au CG A:Phe41 3.44 Au O A:Leu43 4.76 Au CB A:Gln44 4.47 Au C A:Gln44 4.94 Au CA A:Gln44 4.25 Au N A:Leu45 4.51 Au O A:Ile46 4.08 Au N A:Ile46 4.56 Au CB A:Ile46 4.86 Au C A:Ile46 4.99 Au CE2 A:Phe73 3.99 Au CD2 A:Phe73 4.88 Au CZ A:Phe73 4.75 Au O A:Hoh2023 3.99 Au O A:Hoh2028 3.85 interactive model: Gold binding site 2 out of 4 in 1ut7 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Gold in the PDB 1ut7. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Gold atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Cys33, A: Ala36, A: Ala37, A: Leu139, A: Au1165, conact list: Atom Atom Distance (A) Au O A:Cys33 3.20 Au N A:Cys33 4.89 Au CB A:Cys33 3.62 Au CB A:Cys33 3.61 Au SG A:Cys33 4.04 Au SG A:Cys33 2.59 Au C A:Cys33 3.76 Au CA A:Cys33 3.55 Au C A:Ala36 4.82 Au CB A:Ala36 4.15 Au CA A:Ala36 4.99 Au N A:Ala37 4.41 Au CB A:Ala37 4.45 Au CA A:Ala37 4.86 Au CD1 A:Leu139 4.52 Au AU A:Au1165 0.00 Au AU A:Au1165 4.88 interactive model: Gold binding site 3 out of 4 in 1ut7 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Gold in the PDB 1ut7. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Gold atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Met28, A: Val29, A: Cys33, A: Val111, A: Au1165, conact list: Atom Atom Distance (A) Au O A:Met28 4.52 Au C A:Met28 4.95 Au O A:Val29 5.00 Au N A:Val29 4.92 Au CB A:Val29 4.40 Au CG2 A:Val29 3.99 Au CG1 A:Val29 4.32 Au CA A:Val29 4.19 Au CB A:Cys33 3.19 Au CB A:Cys33 3.17 Au SG A:Cys33 2.32 Au SG A:Cys33 2.86 Au CA A:Cys33 4.62 Au CB A:Val111 4.51 Au CG1 A:Val111 4.29 Au AU A:Au1165 4.88 Au AU A:Au1165 0.00 interactive model: Gold binding site 4 out of 4 in 1ut7 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 4 of Gold in the PDB 1ut7. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Gold atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: B: Cys33, B: Arg34, B: Leu139, B: Hoh2080, conact list: Atom Atom Distance (A) Au O B:Cys33 3.61 Au N B:Cys33 4.19 Au CB B:Cys33 2.40 Au CB B:Cys33 2.32 Au SG B:Cys33 2.17 Au SG B:Cys33 1.57 Au C B:Cys33 3.60 Au CA B:Cys33 2.91 Au N B:Arg34 4.72 Au CD1 B:Leu139 4.49 Au CD2 B:Leu139 4.55 Au O B:Hoh2080 3.78 interactive model: