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Gold in PDB 1lj2: Recognition of EIF4G By Rotavirus NSP3 Reveals A Basis For Mrna Circularization

Protein crystallography data

The structure of Recognition of EIF4G By Rotavirus NSP3 Reveals A Basis For Mrna Circularization, PDB code: 1lj2 was solved by C.M.Groft, S.K.Burley, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.38
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 59.690, 74.040, 77.460, 90.00, 90.00, 90.00
R / Rfree (%) 22.1 / 27.2

Gold Binding Sites:

The binding sites of Gold atom in the Recognition of EIF4G By Rotavirus NSP3 Reveals A Basis For Mrna Circularization (pdb code 1lj2). This binding sites where shown within 5.0 Angstroms radius around Gold atom.
In total 3 binding sites of Gold where determined in the Recognition of EIF4G By Rotavirus NSP3 Reveals A Basis For Mrna Circularization, PDB code: 1lj2:
Jump to Gold binding site number: 1; 2; 3;

Gold binding site 1 out of 3 in 1lj2

Go back to Gold Binding Sites List in 1lj2
Gold binding site 1 out of 3 in the Recognition of EIF4G By Rotavirus NSP3 Reveals A Basis For Mrna Circularization


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 1 of Recognition of EIF4G By Rotavirus NSP3 Reveals A Basis For Mrna Circularization within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Au2

b:94.8
occ:1.00
CG B:ARG250 3.8 17.9 1.0
CD B:LYS259 4.6 20.9 1.0
NE B:ARG250 4.6 25.3 1.0
O B:HOH1228 4.6 48.9 1.0
CD B:ARG250 4.7 19.9 1.0
CB B:ARG250 4.8 19.8 1.0
OE2 B:GLU263 4.9 27.4 1.0
CB B:LYS259 4.9 21.6 1.0

Gold binding site 2 out of 3 in 1lj2

Go back to Gold Binding Sites List in 1lj2
Gold binding site 2 out of 3 in the Recognition of EIF4G By Rotavirus NSP3 Reveals A Basis For Mrna Circularization


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 2 of Recognition of EIF4G By Rotavirus NSP3 Reveals A Basis For Mrna Circularization within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Au3

b:95.1
occ:1.00
O B:HOH1223 3.0 42.8 1.0
CD1 B:ILE213 4.1 22.4 1.0
O B:LEU209 4.1 25.9 1.0
CA B:GLN210 4.1 27.1 1.0
CD1 A:LEU209 4.2 26.2 1.0
CB B:ILE213 4.5 23.4 1.0
CG2 B:ILE213 4.5 19.4 1.0
CD2 A:LEU209 4.5 27.7 1.0
C B:LEU209 4.5 26.2 1.0
N B:GLN210 4.6 26.9 1.0
O B:GLN210 4.7 28.6 1.0
CG A:LEU209 4.8 28.8 1.0
C B:GLN210 4.8 27.0 1.0
CG B:GLN210 4.8 28.1 1.0
CD B:PRO214 4.8 24.3 1.0
CG1 B:ILE213 4.9 20.4 1.0
CB B:GLN210 5.0 28.0 1.0

Gold binding site 3 out of 3 in 1lj2

Go back to Gold Binding Sites List in 1lj2
Gold binding site 3 out of 3 in the Recognition of EIF4G By Rotavirus NSP3 Reveals A Basis For Mrna Circularization


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 3 of Recognition of EIF4G By Rotavirus NSP3 Reveals A Basis For Mrna Circularization within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Au1

b:34.4
occ:1.00
O D:HOH1100 2.8 22.6 1.0
CA D:GLY149 3.5 28.5 1.0
CA D:PRO145 3.8 37.8 1.0
CB D:PRO145 3.9 38.4 1.0
N D:GLY149 4.1 30.4 1.0
N D:PRO145 4.5 36.2 1.0
C D:GLY148 4.6 31.1 1.0
O D:GLY148 4.7 28.5 1.0
C D:GLY149 4.9 30.8 1.0
C D:PRO145 4.9 39.0 1.0
O D:PRO145 5.0 41.3 1.0
CD D:PRO145 5.0 36.2 1.0

Reference:

C.M.Groft, S.K.Burley. Recognition of EIF4G By Rotavirus NSP3 Reveals A Basis For Mrna Circularization. Mol.Cell V. 9 1273 2002.
ISSN: ISSN 1097-2765
PubMed: 12086624
DOI: 10.1016/S1097-2765(02)00555-5
Page generated: Sat Dec 12 01:53:02 2020

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