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Gold in PDB 1g58: Crystal Structure of 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase Gold Derivative

Protein crystallography data

The structure of Crystal Structure of 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase Gold Derivative, PDB code: 1g58 was solved by D.-I.Liao, J.C.Calabrese, Z.Wawrzak, P.V.Viitanen, D.B.Jordan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.00 / 1.55
Space group P 31
Cell size a, b, c (Å), α, β, γ (°) 78.220, 78.220, 69.880, 90.00, 90.00, 120.00
R / Rfree (%) n/a / n/a

Gold Binding Sites:

The binding sites of Gold atom in the Crystal Structure of 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase Gold Derivative (pdb code 1g58). This binding sites where shown within 5.0 Angstroms radius around Gold atom.
In total 2 binding sites of Gold where determined in the Crystal Structure of 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase Gold Derivative, PDB code: 1g58:
Jump to Gold binding site number: 1; 2;

Gold binding site 1 out of 2 in 1g58

Go back to Gold Binding Sites List in 1g58
Gold binding site 1 out of 2 in the Crystal Structure of 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase Gold Derivative


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 1 of Crystal Structure of 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase Gold Derivative within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Au302

b:21.4
occ:0.67
SG A:CYS188 2.2 18.2 1.0
O A:HOH400 2.5 34.5 1.0
CB A:CYS188 3.3 17.3 1.0
N A:ALA185 3.5 17.8 1.0
N A:GLY41 3.5 13.2 1.0
C A:ARG184 3.6 19.6 1.0
CA A:ALA185 3.6 15.5 1.0
CA A:GLY41 3.7 11.6 1.0
O A:ALA183 3.7 15.8 1.0
O A:ARG184 3.7 17.6 1.0
CD2 A:LEU32 3.9 24.6 1.0
C A:GLU40 4.0 14.7 1.0
CD1 A:LEU32 4.2 25.4 1.0
CA A:ARG184 4.3 17.1 1.0
CG A:LEU32 4.3 25.8 1.0
C A:ALA183 4.3 15.4 1.0
CB A:ALA185 4.4 15.9 1.0
CB A:LEU32 4.4 18.2 1.0
O A:HOH310 4.4 15.7 1.0
O A:GLU40 4.5 16.9 1.0
CA A:CYS188 4.6 11.4 1.0
C A:ALA185 4.6 13.1 1.0
N A:ARG184 4.6 15.8 1.0
CA A:GLU40 4.6 17.6 1.0
N A:CYS188 4.7 13.2 1.0
N A:GLU40 4.7 22.1 1.0
O A:ALA185 4.7 15.6 1.0
C A:ASN39 4.9 27.5 1.0

Gold binding site 2 out of 2 in 1g58

Go back to Gold Binding Sites List in 1g58
Gold binding site 2 out of 2 in the Crystal Structure of 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase Gold Derivative


Mono view


Stereo pair view

A full contact list of Gold with other atoms in the Au binding site number 2 of Crystal Structure of 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase Gold Derivative within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Au301

b:18.3
occ:0.44
O B:HOH355 2.6 26.4 1.0
O B:HOH362 2.6 33.6 1.0
O B:HOH449 2.7 48.6 1.0
CD2 B:LEU57 3.5 19.5 1.0
O B:HOH414 3.5 24.0 1.0
ND1 B:HIS195 3.9 22.6 1.0
CB B:LEU57 4.1 17.5 1.0
CG B:LEU57 4.3 15.0 1.0
CD1 B:LEU57 4.4 24.8 1.0
CG B:GLN54 4.6 8.4 1.0
CE1 B:HIS195 4.6 21.9 1.0
CG B:HIS195 4.6 17.5 1.0
O B:GLU53 4.7 11.2 1.0
CA B:GLN54 4.8 10.5 1.0
CB B:HIS195 4.8 14.0 1.0
O B:HOH356 4.9 21.6 1.0

Reference:

D.I.Liao, J.C.Calabrese, Z.Wawrzak, P.V.Viitanen, D.B.Jordan. Crystal Structure of 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase of Riboflavin Biosynthesis. Structure V. 9 11 2001.
ISSN: ISSN 0969-2126
PubMed: 11342130
DOI: 10.1016/S0969-2126(00)00550-5
Page generated: Sat Dec 12 01:52:58 2020

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